View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19111_low_5 (Length: 531)
Name: NF19111_low_5
Description: NF19111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19111_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 14 - 466
Target Start/End: Complemental strand, 50240356 - 50239907
Alignment:
| Q |
14 |
cagagacaacaaccaagtttttggaaccaagtttgagtaggaaaagtggtccataagtttgtgacatggatgcaagcatacgatgattgagatcattgcc |
113 |
Q |
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| T |
50240356 |
cagagacaacaaccaagtttttggaaccaagtttgagtaggaaaagtggtccataagtttgtgacatggatgcaagcatacgatgattgagatcattgcc |
50240257 |
T |
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| Q |
114 |
aacttgaagccagtttccaaatataggaacagaaaaagggcttggaggtgaagaatttttcttatggctgtttgaattggaattagttaggtatataaac |
213 |
Q |
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| T |
50240256 |
aacttgaagccagtttccaaatataggaacagaaaaagggcttggaggtgaagaatttttcttatggctgtttgaattggaattagttaggtatataaac |
50240157 |
T |
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| Q |
214 |
cataataataatgtgatgaaagtggcacaagcaattgaggttgagagagagggtgtaaaaaagagttttgtagtaattattggaatgagtatagcaaaaa |
313 |
Q |
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| T |
50240156 |
cataataataatgtgatgaaagtggcacaagcaattgaggttgagagagagggtgtaaaaaagagttttgtagtaattattggaatgagtatagcaaaaa |
50240057 |
T |
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| Q |
314 |
gagtgaaaaatattggnnnnnnngtgagttgaaggagagtcatgttttgatttgtgaggtagtaaaagataatttgaatggatgaattagagaattgtga |
413 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
50240056 |
gagtgaaaaatattggtttttttgtgagttgaaggagagtcatgttttgatttgtgaggtagtaaaagat-atttgaatggatgaatt--agaattgtga |
50239960 |
T |
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| Q |
414 |
tgggttggattaaggaatgagattgtttatatatgttgggagtgacgaggtag |
466 |
Q |
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| T |
50239959 |
tgggttggattaaggaatgagattgtttatatatgttgggagtgacgaggtag |
50239907 |
T |
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