View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_high_13 (Length: 464)
Name: NF19113_high_13
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 244 - 453
Target Start/End: Original strand, 43598714 - 43598923
Alignment:
| Q |
244 |
aggccattgaggtgtttgagtagcagcagtttcagacctgttatttatcattcaaattttacatattaagaaataagtgcgacgagtaattgtattgata |
343 |
Q |
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| T |
43598714 |
aggccattgaggtgtttgaatagcagcagtttcagacctgttatttatcattcaaattttacatattaagaaataagtgcgacgagtaattgtattgata |
43598813 |
T |
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| Q |
344 |
agtcacatgagtacaagataatttgagacacacttaagtattgaactagtcacgctatttgtctaagaaatgtttttacaaaagagcacactttagagtt |
443 |
Q |
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| T |
43598814 |
agtcacatgaatacaagataatttgagacacacttaagtactgaactagtcacactatttgtctaagaaatgtttttacaaaagagcacactttagagtt |
43598913 |
T |
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| Q |
444 |
gaaccttctt |
453 |
Q |
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|||||||||| |
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| T |
43598914 |
gaaccttctt |
43598923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 43598484 - 43598644
Alignment:
| Q |
18 |
aaaattgcatgtattacacttgaataaatgctttttaccttattgagaaaatgaattgacccctcttaatcatctttcgatgaaacgaggctgctgtgtt |
117 |
Q |
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| T |
43598484 |
aaaattgcatgtattacacttgaataaatgctttttaccttattgagaaaatgaattgacccctcttaatcatctttcgatgaaacaaggctgctgtgtt |
43598583 |
T |
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| Q |
118 |
ttttctgctgctggcctgagtgttttctctgtgcaggggggtgctgacagcatttggggcc |
178 |
Q |
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| T |
43598584 |
ttttctgctgctggtctgagtgttttctctgtgcaggggggtgctgacagcatttggggcc |
43598644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 27165062 - 27164982
Alignment:
| Q |
330 |
taattgtattgataagtcacatgagtacaagataatttgagacacacttaagtattgaactagtcacgctatttgtctaag |
410 |
Q |
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| T |
27165062 |
taattttattgataagtcacatgagtacaagataacttgatgcacactcaagtacggaactagtcacactatttgtctaag |
27164982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 34623666 - 34623723
Alignment:
| Q |
37 |
ttgaataaatgctttttaccttattgagaaaatgaattgacccctcttaatcatcttt |
94 |
Q |
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| T |
34623666 |
ttgaataaatgctttttactttattgagaaaatgaattgacccttcttaattatcttt |
34623723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 31199163 - 31199105
Alignment:
| Q |
118 |
ttttctgctgctggcctgagtgttttctctgtgcaggggggtgctgacagcatttggggcc |
178 |
Q |
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|||||||||||||| ||||| |||||| |||| |||||| |||||||||||||||||||| |
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| T |
31199163 |
ttttctgctgctggtgtgagt-ttttctatgtgtaggggg-tgctgacagcatttggggcc |
31199105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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