View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19113_high_15 (Length: 430)

Name: NF19113_high_15
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19113_high_15
NF19113_high_15
[»] chr4 (7 HSPs)
chr4 (1-303)||(3781302-3781604)
chr4 (1-97)||(3767318-3767417)
chr4 (21-97)||(3777006-3777082)
chr4 (14-103)||(3746134-3746220)
chr4 (29-82)||(3751963-3752016)
chr4 (30-87)||(3762943-3763000)
chr4 (36-84)||(3755837-3755885)
[»] chr7 (1 HSPs)
chr7 (367-410)||(21018059-21018102)
[»] chr5 (1 HSPs)
chr5 (362-411)||(16843775-16843824)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 3781302 - 3781604
Alignment:
Q  1 tgtcttgtttttctgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3781302 tgtcttgtttttctgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggttgg 3781401  T
Q  101 gtttgtgagatttttgttaagatgatgaatgtggagaaagtaaagtagtggaggagaaaagaataataatggaggtaaatgaagtgatggtgaggtgatg 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3781402 gtttgtgagatttttgttaagataatgaatgtggagaaagtaaagtagtggaggagaaaagaataataatggaggtaaatgaagtgatggtgaggtgatg 3781501  T
Q  201 aggggtttgtcttgtttataaagagaacaaatatcaaaaagcaagtaatcgaaaaagaacaaacaatggtgtagaacgtagggaaaagtatttttcttta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||    
T  3781502 aggggtttgtcttgtttataaagagaacaaatatcaaaaagcaagtaaacgaaaaagaacaaacaacggagtagaacgtaggcaaaagtatttttcttta 3781601  T
Q  301 ttt 303  Q
    |||    
T  3781602 ttt 3781604  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 3767318 - 3767417
Alignment:
Q  1 tgtcttgtttttctgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaag---tgaggaaatgttgggaaggcattgtggt 97  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||| ||||    
T  3767318 tgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggt 3767417  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 3777006 - 3777082
Alignment:
Q  21 gttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggt 97  Q
    ||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  3777006 gttgaagaagtgagtgtgttacaagagataagaaggaagaagaacaaagtgaggaaatgtttggaagacattgtggt 3777082  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 3746134 - 3746220
Alignment:
Q  14 tgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggttgggtt 103  Q
    |||||||||||||||   ||| ||||||||||| | ||||||||||||||| ||||||||||| ||||||| |||||| ||||| |||||    
T  3746134 tgatgaagttgaagt---gagggtgttgcaagagaagagaaggaagaagaaaaaagtgaggaagtgttgggtaggcatggtggtggggtt 3746220  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 3751963 - 3752016
Alignment:
Q  29 agtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttg 82  Q
    |||||| ||||||||||| | |||||||||||||||||||||||| ||||||||    
T  3751963 agtgagagtgttgcaagagaggagaaggaagaagaacaaagtgagaaaatgttg 3752016  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 3762943 - 3763000
Alignment:
Q  30 gtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaag 87  Q
    ||||| ||||||||||| |  ||||||||||||||||||||||||||||||| |||||    
T  3762943 gtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaag 3763000  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 3755837 - 3755885
Alignment:
Q  36 gtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttggg 84  Q
    ||||||||||| |  |||||||||||||||||||||| ||| |||||||    
T  3755837 gtgttgcaagaaagaagaaggaagaagaacaaagtgatgaagtgttggg 3755885  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 410
Target Start/End: Original strand, 21018059 - 21018102
Alignment:
Q  367 ttaacaacatttaaatagtaaatttttaaagaaattgatgcatt 410  Q
    |||||||| ||||||||||||||||||| |||||||||| ||||    
T  21018059 ttaacaacctttaaatagtaaatttttatagaaattgattcatt 21018102  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 411
Target Start/End: Original strand, 16843775 - 16843824
Alignment:
Q  362 actcattaacaacatttaaatagtaaatttttaaagaaattgatgcattt 411  Q
    |||| |||||||  |||||||||||| |||||| ||||||||||||||||    
T  16843775 actctttaacaatctttaaatagtaagtttttatagaaattgatgcattt 16843824  T

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