View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_high_2 (Length: 714)
Name: NF19113_high_2
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 677; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 1 - 702
Target Start/End: Original strand, 4145650 - 4146351
Alignment:
| Q |
1 |
aatcctagcttgaggtctgtgttgtttgaggttattgtttcattgtctttgagtaatttggatgatgtaatagtgtcgttgacagcactataacatgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145650 |
aatcctagcttgaggtctgtgttgtttgaggttattgtttcattgtctttgagtaatttggatgatgtaatagtgtcgttgacagcactataacatgaat |
4145749 |
T |
|
| Q |
101 |
aaaatgtgcaaaatatgaggaatgttatgaacaagtggtttttgttatgacttagaaaagccatgaacatgtaacaaaatggtgttttttgaggaatact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145750 |
aaaatgtgcaaaatatgaggaatgttatgaacaagtggtttttgttatgacttagaaaagccatgaacatgtaacaaaatggtgttttttgaggaatact |
4145849 |
T |
|
| Q |
201 |
aggatttaatttggtttgatgagatttgtaatttgtttcatgttcctaatcaaattcacgtggaagaagttgttgaattgtggagtcgttgagatgctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145850 |
aggatttaatttggtttgatgagatttgtaatttgtttcatgttcctaatcaaattcacgtggaagaagttgttgaattgtggagtcgttgagatgctct |
4145949 |
T |
|
| Q |
301 |
attgagtttgcaattagttgactttagcaacgtgctaagcaatgggaattacatggaaaaatcataagttgcattattttattacctatgaagccaaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145950 |
attgagtttgcaattagttgactttagcaacgtgctaagcaatgggaattacatggaaaaatcataagttgcattattttattacctatgaagccaaatt |
4146049 |
T |
|
| Q |
401 |
gtgtattccttgcgggtagctttttcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146050 |
gtgtattccttgcgggtagctttttcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaa |
4146149 |
T |
|
| Q |
501 |
atttacattttcaatccttaagccctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgaga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4146150 |
atttacattttcaatccttaagccctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgaga |
4146249 |
T |
|
| Q |
601 |
agtgaatcgatgtatagannnnnnngttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaatattctt |
700 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4146250 |
agtgaatcgatgtatagatttttttgttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttctt |
4146349 |
T |
|
| Q |
701 |
cg |
702 |
Q |
| |
|
|| |
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|
| T |
4146350 |
cg |
4146351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 4134848 - 4135027
Alignment:
| Q |
1 |
aatcctagcttgaggtctgtgttgtttgaggttattgtttcattgtctttgagtaatttggatgatgtaatagtgtcgttgacagcactataacatgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | || |||| || |||||||||||||| |
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| T |
4134848 |
aatcctagcttgaggtctgtgttgtttgaggttattgtttcattgtctttgagtgattttgatgatgtaatggcgttgttggtagaactataacatgaat |
4134947 |
T |
|
| Q |
101 |
aaaatgtgcaaaatatgaggaatgttatgaacaagtggtttttgttatgacttag-aaaagccatgaacatgtaacaaaa |
179 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| ||| | ||||||||||| ||||||||| || |||||||||| |
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|
| T |
4134948 |
aaaatgtgcaaaatatgaggaatgtaatgaataagtcatttatattatgacttagaaaaagccataaatgtgtaacaaaa |
4135027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 4124303 - 4124482
Alignment:
| Q |
1 |
aatcctagcttgaggtctgtgttgtttgaggttattgtttcattgtctttgagtaatttggatgatgtaatagtgtcgttgacagcactataacatgaat |
100 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |||| |||||||||||||||| |
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|
| T |
4124303 |
aatcctagcttgaagtttgtgttgtttgaggttattgtttcattgtctttgagagatttggatggtgtaatggtgtcattgattgcactataacatgaat |
4124402 |
T |
|
| Q |
101 |
aaaatgtgcaaaatatgaggaatgttatgaacaagtggtttttgttatgacttagaaaagccatgaacatgtaacaaaat |
180 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||| |||| ||| | ||||||| |||||||||||| || ||||||||||| |
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| T |
4124403 |
aaaaggtgcaaaatatgaggactgtaatgaataagtcatttgtattatgacgtagaaaagccattaatgtgtaacaaaat |
4124482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4153653 - 4153885
Alignment:
| Q |
1 |
aatcctagcttgaggtctgtgttgtttgaggttattgtttcattgtctttgagtaatttggatgatgtaatagtgtcgttgacagcactataacatgaat |
100 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||||||||||||| |
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|
| T |
4153653 |
aatcctagcttgaaatttgtgttgtttgaggttattgtttcattgtctttgagagatttggatgatgtaatggtgtcattgattgcactataacatgaat |
4153752 |
T |
|
| Q |
101 |
aaaatgtgcaaaatatgaggaatg---ttatgaacaagtggtttttgttatgacttagaaaagccatgaacatgtaacaaa-------atggtgtttttt |
190 |
Q |
| |
|
||| |||||||||||| ||||| | ||||||| |||| ||| || ||||||||||||||||| || ||||||| | ||| |||||||| |
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| T |
4153753 |
aaattgtgcaaaatataaggaaagtaattatgaagaagtaatttgaattgtgacttagaaaagccataaatgtgtaacagattgttgtatgatgtttttt |
4153852 |
T |
|
| Q |
191 |
gaggaatactaggatttaatttggtttgatgag |
223 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |
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|
| T |
4153853 |
gaggaatactaggatttagtttggtttaatgag |
4153885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4164012 - 4164236
Alignment:
| Q |
1 |
aatcctagcttgaggtctgtgttgtttgaggttattgtttcattgtctttgagtaatttggatgatgtaatagtgtcgttgacagcactataacatgaat |
100 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||| || |||||||||||||| |
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|
| T |
4164012 |
aatcctagcttgaaatttgtgttgtttgaggttattgtttcgttgtctttgagtgatttagatgatgtaatggtgtcgttggtagaactataacatgaat |
4164111 |
T |
|
| Q |
101 |
aaaatgtgcaaaatatgaggaatg---ttatgaacaagtggtttttgttatgacttagaaaagccatgaacatgtaacaaaat----ggtg-ttttttga |
192 |
Q |
| |
|
|||| |||| |||||||| ||| | ||||||| ||||||||| |||| ||| ||||||||||||| || ||||||| | |||| |||||||| |
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|
| T |
4164112 |
aaaaggtgctaaatatgatgaacgtaattatgaagaagtggtttgtgttgtgaattagaaaagccataaatggataacaaattgttaggtgtttttttga |
4164211 |
T |
|
| Q |
193 |
ggaatactaggatttaatttggttt |
217 |
Q |
| |
|
|||||||||| ||||| |||||||| |
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|
| T |
4164212 |
ggaatactagaatttagtttggttt |
4164236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 4124500 - 4124568
Alignment:
| Q |
185 |
ttttttgaggaatactaggatttaatttggtttgatgagatttgtaatttgtttcatgttcctaatcaaa |
254 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||| |||||||||||| ||| |||||| ||||| |
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|
| T |
4124500 |
ttttttgaggaatactagaacttagtttggtttgatgag-tttgtaatttgtaacatattcctattcaaa |
4124568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 702
Target Start/End: Complemental strand, 41430474 - 41430404
Alignment:
| Q |
632 |
tttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaatattcttcg |
702 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||||| |||| ||| | || ||||||||||| ||||||| |
|
|
| T |
41430474 |
tttgctgcctcatcaaactttgagtttctttgtcacgagtctcctttggcggatcttttgaattttcttcg |
41430404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 702
Target Start/End: Original strand, 12734679 - 12734744
Alignment:
| Q |
637 |
tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaatattcttcg |
702 |
Q |
| |
|
|||||| || |||||||||||||||| ||||| |||| || | ||| ||||||||||| ||||||| |
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|
| T |
12734679 |
tgcctcatcaaactttgagtttctttatcacgagtctcctccaacggatcttttgaatcttcttcg |
12734744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 702
Target Start/End: Original strand, 31525096 - 31525149
Alignment:
| Q |
649 |
ctttgagtttctttgtcacgtgtctacttcgacgaatcttttgaatattcttcg |
702 |
Q |
| |
|
|||||||||||||||||||| |||| || | ||| ||||||||||| ||||||| |
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|
| T |
31525096 |
ctttgagtttctttgtcacgagtctcctccaacggatcttttgaatcttcttcg |
31525149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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