View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_high_20 (Length: 379)
Name: NF19113_high_20
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 55220443 - 55220240
Alignment:
| Q |
4 |
tatgtttgcaagggtgaaggtctttttatggaagtgacgttgagttgagtgtaagtgtggataagctaagggtagctttggaaatctacattattaaaat |
103 |
Q |
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| T |
55220443 |
tatgtttgcaagagtgaaggtctttttatggaagtgacgttgagttgagtgtaagtgtggataagctaagggcagctttggaaatctaca---------- |
55220354 |
T |
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| Q |
104 |
agtattacagttggaaagagagaaagaagagagacctaatcatctaaccaccacctcagactcagaggtaggtaggtccaccatgtcagcctggcctggt |
203 |
Q |
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| T |
55220353 |
---------gttggaaagagagaaagaagagagacctaatcatctaaccaccacctcagactcagaggtaggtaggtccaccatgtcagcctggcctggt |
55220263 |
T |
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| Q |
204 |
aacaatttcatttcattttcatt |
226 |
Q |
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| T |
55220262 |
aacaatttcatttcattttcatt |
55220240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 55220162 - 55220108
Alignment:
| Q |
316 |
caaagtttccgttgagtaaagggatattggctcagacacacacagtgagaataat |
370 |
Q |
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| T |
55220162 |
caaagtttccgttgagtaaagggatattggctcagacacacacagtgagcataat |
55220108 |
T |
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