View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_high_21 (Length: 378)
Name: NF19113_high_21
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_high_21 |
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| [»] scaffold1320 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 15079624 - 15079283
Alignment:
| Q |
19 |
cagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattccaccaaattcccatgtgattgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || |
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| T |
15079624 |
cagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaactatcacataaggctttcattccaccaaattcccatgtgatcgc |
15079525 |
T |
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| Q |
119 |
taaccacctctacttcagctttagaaggttcatttatgttcagaaccttttacattcaatgtaacaacctgtagccaatcttgaattttggacattgaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079524 |
taaccacctctacttcagctttagaaggttcatttatgttcagaaccttttacattcaatgtaacaacctgtagccaatcttgaattttggacattgaaa |
15079425 |
T |
|
| Q |
219 |
ataagtgttttaaatagatacttcatgtttgaactttttcagagtacaaa-aggacaacacaaaatgaaaataacttattttctttctcttcttctatat |
317 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
15079424 |
ataagtgttttaaataaatacttcatgtttgaactttttcagagtacaaataggacaacacaaaatgaaaataacttattttctttcacttgttctatat |
15079325 |
T |
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| Q |
318 |
acaaatcttcaaaaaataagttgtagtgtgaaacaaaggtag |
359 |
Q |
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| T |
15079324 |
acaaatcttcaaaaaataagttgtagtgtgaaaccaaggtag |
15079283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 15166624 - 15166980
Alignment:
| Q |
19 |
cagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattccaccaaattcccatgtgattgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
15166624 |
cagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaactatcacataaggctttcattccaccaaattcccatgtgattgc |
15166723 |
T |
|
| Q |
119 |
taaccacctctacttcagctttagaaggttcatttatgttcagaaccttttacattcaatgtaa-----------------ca-acctgtagccaatctt |
200 |
Q |
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| T |
15166724 |
taaccacctctac---agctttagaaggttcatttatgttcagaaccttttacattcgatgtaaatgttagtaggaattgtcacaactgtagccaatctt |
15166820 |
T |
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| Q |
201 |
gaattttggacattgaaaataagtgttttaaatagatacttcatgtttgaactttttcagagtacaaa-aggacaacacaaaatgaaaataacttatttt |
299 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15166821 |
gaattttggacattgaaaataagtgttttaaataaatacttcatgtttgaactttttcagagtacaaataggacaacacaaaatgaaaataacttatttt |
15166920 |
T |
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| Q |
300 |
ctttctcttcttctatatacaaatcttcaaaaaataagttgtagtgtgaaacaaaggtag |
359 |
Q |
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| T |
15166921 |
ctttcacttgttctatatacaaatcttcaaaaaataagttgtagtgtgaaaccaaggtag |
15166980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 55 - 284
Target Start/End: Original strand, 15162080 - 15162329
Alignment:
| Q |
55 |
atccatgcattgccaatgaactatgaaataaggctttcattccaccaaattcccatgtgattgctaaccacctctacttcagctttagaaggttcattta |
154 |
Q |
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|||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15162080 |
atccatgcattgccaatgaactatcacataaggctttcagtccaccaaattcccatgtgatcgctaaccacctctacttcagctttagaaggttcattta |
15162179 |
T |
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| Q |
155 |
tgttcagaaccttttacattcaatgta-------------------acaacctgtagccaatcttgaattttggacattgaaaataagtgttttaaatag |
235 |
Q |
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| T |
15162180 |
tgttcagaaccttttacattcgatgtaaatgttagtaggaattgtcataacctgtagccaatcttgaattttggacattgaaaataagtgttttaaataa |
15162279 |
T |
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| Q |
236 |
atacttcatgtttgaactttttcagagtacaaa-aggacaacacaaaatg |
284 |
Q |
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| T |
15162280 |
atccttcatgtttgaacttttttagaatacaaataggacaacacaaaatg |
15162329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 15163166 - 15163244
Alignment:
| Q |
281 |
aatgaaaataacttattttctttctcttcttctatatacaaatcttcaaaaaataagttgtagtgtgaaacaaaggtag |
359 |
Q |
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||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| || |||||||||| ||||||| |
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| T |
15163166 |
aatgaaaataaattattttctttcacttgttctatatacaaatcttcaaaaaataagatgcagtgtgaaaccaaggtag |
15163244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1320 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold1320
Description:
Target: scaffold1320; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 187 - 359
Target Start/End: Complemental strand, 2063 - 1890
Alignment:
| Q |
187 |
ctgtagccaatcttgaattttggacattgaaaataagtgttttaaatagatacttcatgtttgaactttttcagagtacaaa-aggacaacacaaaatga |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2063 |
ctgtagccaatcttgaattttggacattgaaaataagtgttttaaataaatacttcatgtttgaactttttcagagtacaaataggacaacacaaaatga |
1964 |
T |
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| Q |
286 |
aaataacttattttctttctcttcttctatatacaaatcttcaaaaaataagttgtagtgtgaaacaaaggtag |
359 |
Q |
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| T |
1963 |
aaataacttattttctttcacttgttctatatacaaatcttcaaaaaataagttgtagtgtgaaaccaaggtag |
1890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 3478467 - 3478612
Alignment:
| Q |
19 |
cagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaa-ctatgaaataaggctttcattccaccaaattcccatgtgattg |
117 |
Q |
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||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| | || | ||||||||| | ||||||||||| || | |||| | |
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| T |
3478467 |
cagactgtatcagttaacaagtcttgagcattaccaatgcatgcattgccaatgaacccatcacataaggcttgtaatccaccaaatttccctctgatcg |
3478566 |
T |
|
| Q |
118 |
ctaaccacctctacttcagctttagaaggttcatttatgttcagaa |
163 |
Q |
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| ||| || ||||||||| ||||||||||||||| | ||||||||| |
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| T |
3478567 |
ccaactacatctacttcaactttagaaggttcatatttgttcagaa |
3478612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 3538032 - 3537953
Alignment:
| Q |
34 |
cacaagtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattccaccaaattcccatgtgat |
115 |
Q |
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| T |
3538032 |
cacaagtcttaagaattacaaat--atgcattgccaatgaaccatcacataaggctttcaatccaccaaatttccctgtgat |
3537953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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