View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_high_23 (Length: 338)
Name: NF19113_high_23
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_high_23 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 34566850 - 34567172
Alignment:
| Q |
16 |
gttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagactataaacaatgtgacatctttccg |
115 |
Q |
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| T |
34566850 |
gttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagactataaacaatgtgacatctttccg |
34566949 |
T |
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| Q |
116 |
cgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtagatttcgtctgagacaaggtgtat |
215 |
Q |
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| T |
34566950 |
cgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtagatttcgtctgagacaaggtgtat |
34567049 |
T |
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| Q |
216 |
gttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgttgaatcgatatgcctaatggatttgatgggttggttataagtactgcttttact |
315 |
Q |
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| T |
34567050 |
gttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgttgaatcgatatgcctaatggatttgatgggttggttataagtactgcttttact |
34567149 |
T |
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| Q |
316 |
ttcatgttcatggattctgcatt |
338 |
Q |
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| T |
34567150 |
ttcatgttcatggattctgcatt |
34567172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 42789177 - 42789496
Alignment:
| Q |
16 |
gttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagactataaacaatgtgacatctttccg |
115 |
Q |
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| T |
42789177 |
gttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagacaatgtgaactctctctg |
42789276 |
T |
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| Q |
116 |
cgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtagatttcgtctgagacaaggtgtat |
215 |
Q |
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| T |
42789277 |
catctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataaggtggat |
42789376 |
T |
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| Q |
216 |
gttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgttgaatcgatatgcctaatggatttgatgggttggttataagtactgcttttact |
315 |
Q |
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| T |
42789377 |
gttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaagggtttgtgatcagcactccactcact |
42789476 |
T |
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| Q |
316 |
ttcatgttcatggattctgc |
335 |
Q |
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| T |
42789477 |
ttcatgttcattgattctgc |
42789496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 42798715 - 42799034
Alignment:
| Q |
16 |
gttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagactataaacaatgtgacatctttccg |
115 |
Q |
| |
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||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||| ||| || | |
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| T |
42798715 |
gttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagacaatgtgaactctctctg |
42798814 |
T |
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| Q |
116 |
cgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtagatttcgtctgagacaaggtgtat |
215 |
Q |
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| T |
42798815 |
catctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagataaggtggat |
42798914 |
T |
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| Q |
216 |
gttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgttgaatcgatatgcctaatggatttgatgggttggttataagtactgcttttact |
315 |
Q |
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| T |
42798915 |
gttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaagggtttgtgatcagcactccactcact |
42799014 |
T |
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| Q |
316 |
ttcatgttcatggattctgc |
335 |
Q |
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||||||||||| |||||||| |
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| T |
42799015 |
ttcatgttcattgattctgc |
42799034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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