View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_high_8 (Length: 502)
Name: NF19113_high_8
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Complemental strand, 3346387 - 3345916
Alignment:
| Q |
19 |
atgattcctctcttgaatcgattatctatcgttgttttgcaggttgaggtggttaaccggtgggtttggaaacttcatccttcccagcgatacatggtaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3346387 |
atgattcctctcttgaatcgattatctatcgttgttttgcaggttgaggtggttgatcggtgggtttggaaacttcatccttcccaacgatacatggtaa |
3346288 |
T |
|
| Q |
119 |
aaaatgcttataccaacttaacagctgctgatgttgtttttaacgtggagtataatcatgtgttgtggcttaaagctgtgccgctcaaagttaacatttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
3346287 |
aaaatgcttataccaacttaacagctgctgatgttgtttttaacgtggagtataatcatgcgttgtggcttaaagttgtgccgctcaaagttaacatttt |
3346188 |
T |
|
| Q |
219 |
tgtttggcgcttgcttttgaatcggatttccgcaaaagataatttgtttaggcagcatatcttggttgatactgatattcattgtttatctgactgtagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3346187 |
tgtttggcgcttgcttttgaatcggatttccgcaaaagataatttgtttaggcagcatatcttggttgatactgatattcattgtttatctgactgtagt |
3346088 |
T |
|
| Q |
319 |
tgtttggaagatcaagactgcttattttttccatgcgacttttacagcggttttggagtcatatggctggtaaggcttatcaacacttcatcacggtaac |
418 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3346087 |
tgtttggaagatcaagactgcttattttttcaatgcgacttttacagcggttttggagtcatatggctggtaaggcttatcaacacttgatcacggtaac |
3345988 |
T |
|
| Q |
419 |
tttctagatcatctttttcagtttggtcgtctagggggtatttccaaaaactctcacctagctttcaatatt |
490 |
Q |
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| T |
3345987 |
tttttagatcatctttttcagtttggtggtctaggggatatttccaaaaactctcacctagctttcaatatt |
3345916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 32 - 329
Target Start/End: Complemental strand, 3329431 - 3329136
Alignment:
| Q |
32 |
tgaatcgattatctatcgttgttttgcaggttgaggtggttaaccggtgggtttggaaacttcatccttcccagcgatacatggtaaaaaatgcttatac |
131 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| | |||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3329431 |
tgaatcgattatctaacgttgttttgcaggttgaggtggatgaccggtcggtttgtaaacttcatccttcccaacgatacatggtaaaaaatgcttatac |
3329332 |
T |
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| Q |
132 |
caacttaacagctgctgatgttgtttttaacgtggagtataatcatgtgttgtggcttaaagctgtgccgctcaaagttaacatttttgtttggcgcttg |
231 |
Q |
| |
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|||||||||| || |||||||||||| ||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| || | |
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| T |
3329331 |
caacttaacaactactgatgttgtttctaatgtggagtataatcatgtgtggtggcttaaagcggtgccgctcaaagttaacatttttgtttggtgc--g |
3329234 |
T |
|
| Q |
232 |
cttttgaatcggatttccgcaaaagataatttgtttaggcagcatatcttggttgatactgatattcattgtttatctgactgtagttgtttggaaga |
329 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||||| || |||||||||||||||||| |||||||||||| ||||| |||||||| ||| ||||| |
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| T |
3329233 |
cttttgaatcggatttccacaaaggataatttgtttaagcgacatatcttggttgatactcatattcattgttcatctggctgtagttttttagaaga |
3329136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 340 - 490
Target Start/End: Complemental strand, 3328811 - 3328660
Alignment:
| Q |
340 |
ttattttttccatgcgacttttacagcggttttggagtcatatggctggtaaggcttatcaacacttcatcacggtaactttctagatcatctttttcag |
439 |
Q |
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||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
3328811 |
ttattttttaaatgcaacttttacagcggctttggagtcatatggctggtaaggcttatcaatagttcatcacggtaactttctagatcatctttttcaa |
3328712 |
T |
|
| Q |
440 |
tttggtcgtctaggggg-tatttccaaaaactctcacctagctttcaatatt |
490 |
Q |
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|||||| | |||||||| | ||||||||||||||||| |||||||||||||| |
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| T |
3328711 |
tttggtgggctagggggttttttccaaaaactctcacgtagctttcaatatt |
3328660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 21396812 - 21396704
Alignment:
| Q |
163 |
gtggagtataatcatgtgttgtggcttaaagctgtgccgctcaaagttaacatttttgtttggcgcttgcttttgaatcggatttccgcaaaagataatt |
262 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||| || || |||||| ||||| ||||||| ||| ||| |||| ||| ||||| | |||| ||||| | |
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| T |
21396812 |
gtggaatataatgatgtgttttggcttaaagcagttcccctcaaatttaacgtttttgtccagcggttgttttttaataggattccaacaaaggataact |
21396713 |
T |
|
| Q |
263 |
tgtttaggc |
271 |
Q |
| |
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||||||||| |
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| T |
21396712 |
tgtttaggc |
21396704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 13997095 - 13997231
Alignment:
| Q |
169 |
tataatcatgtgttgtggcttaaagctgtgccgctcaaagttaacatttttgtttggcgcttgcttttgaatcggatttccgcaaaagataatttgttta |
268 |
Q |
| |
|
|||||||||||||| ||||||||| | | ||||| ||||| ||||||||||| |||| || || ||||||| ||||| |||| ||||| ||||||| |
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| T |
13997095 |
tataatcatgtgttatggcttaaatcaattccgcttaaagtaaacatttttgtctggcatttttttctgaatcgaatttcaacaaaggataacttgttta |
13997194 |
T |
|
| Q |
269 |
ggcagcatatcttggttgatactgatattcattgttt |
305 |
Q |
| |
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||| ||||| |||||| ||||||||||||||||||| |
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| T |
13997195 |
ggcgacatattttggttaatactgatattcattgttt |
13997231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 8289624 - 8289701
Alignment:
| Q |
171 |
taatcatgtgttgtggcttaaagctgtgccgctcaaagttaacatttttgtttggcgcttgcttttgaatcggatttc |
248 |
Q |
| |
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||||||||| ||||||||||||| |||| ||| ||| | ||||||||||||| ||| ||| || ||||||||||||| |
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| T |
8289624 |
taatcatgttttgtggcttaaagtggtgcagcttaaaatcaacatttttgtttcgcggttgtttctgaatcggatttc |
8289701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 18024915 - 18024854
Alignment:
| Q |
171 |
taatcatgtgttgtggcttaaagctgtgccgctcaaagttaacatttttgtttggcgcttgc |
232 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| || |||||| | ||||| |||| |
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|
| T |
18024915 |
taatcatgtgttgtggcttaaagcggtgccgctcaaagtcaatatttttatctggcgtttgc |
18024854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 16100675 - 16100779
Alignment:
| Q |
339 |
cttattttttccatgcgacttttaca-gcggttttggagtcatat----ggctggtaaggcttatcaacacttcatcacggtaactttctagatcatctt |
433 |
Q |
| |
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||||||||||| ||| ||||||| | |||| ||||||||||||| | ||||| |||||||| |||||||||| | ||||||||||||||||||||| |
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| T |
16100675 |
cttattttttcaatgtgactttttcgtgcgggtttggagtcatatttatgtctggttaggcttataaacacttcattatggtaactttctagatcatctt |
16100774 |
T |
|
| Q |
434 |
tttca |
438 |
Q |
| |
|
|||| |
|
|
| T |
16100775 |
cttca |
16100779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 11966707 - 11966656
Alignment:
| Q |
169 |
tataatcatgtgttgtggcttaaagctgtgccgctcaaagttaacatttttgt |
221 |
Q |
| |
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||||||||||||||||||||| |||| || ||||||||||||| ||||||||| |
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| T |
11966707 |
tataatcatgtgttgtggctt-aagcggttccgctcaaagttatcatttttgt |
11966656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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