View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_11 (Length: 479)
Name: NF19113_low_11
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 7211558 - 7212016
Alignment:
| Q |
8 |
gacatcatcaacatggaaggtggcaggctcggattggaagggttgcaggaaacaaggacttgtatcttggtacatttagtaagttccctatcctccttcg |
107 |
Q |
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| T |
7211558 |
gacaccatcaacatggaaggtggcaggctcggattggaagggttgcaggaaacaaggacttgtatcttggtacatttagtaagttccctatcctccttcg |
7211657 |
T |
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| Q |
108 |
ctatattctatatcctttgacgaaatcacgatgacaccatgattttgttaaattaagtatttcctccttacttatgtacaaagttataagtgctttgacg |
207 |
Q |
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| T |
7211658 |
ctatattctatatcctttgacgaaatcacgatgacaccatgattttgttaaattaagtatt---tccttacttatgtacaaagttataagtgctttgacg |
7211754 |
T |
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| Q |
208 |
aaatcacg--atggcaccatgattttgtcgaagctccaaaatcacaccgcaaatccaaacctacgcattcattctattttgcattgttgttaagcatg-- |
303 |
Q |
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| T |
7211755 |
aaatcatgatatggcaccatgattttgtcgaagctccaaaatcacaccgcaaatccaaacctacgcattcattctattttgcattgttgttaagcatgat |
7211854 |
T |
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| Q |
304 |
--atagtgtgaaatataatctgacttttatgatatcatgttctagtttaattgagtatcttgatattttatctaattagtgagccataaaaattatatag |
401 |
Q |
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| T |
7211855 |
atatagtgtgaaatataatctgacttttatgatatcatgttctagtttaattgagtatcttgatattttatctaattagtgagccataaaaattatatag |
7211954 |
T |
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| Q |
402 |
gcacgcaagaagaggctgcagaagcatatgatattgcagcaatcaagtttaggggaacaagt |
463 |
Q |
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| T |
7211955 |
gcacgcaagaagaggctgcagaagcatatgatattgcagcaatcaagtttaggggaacaagt |
7212016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 53233919 - 53233865
Alignment:
| Q |
399 |
taggcacgcaagaagaggctgcagaagcatatgatattgcagcaatcaagtttag |
453 |
Q |
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| T |
53233919 |
taggcactcaagaagaagctgcagaagcgtatgatattgcagcaatcaaatttag |
53233865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 30618768 - 30618714
Alignment:
| Q |
8 |
gacatcatcaacatggaaggtggcaggctcggattggaagggttgcaggaaacaa |
62 |
Q |
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| T |
30618768 |
gacatcatcaacatggtagatggcaagctaggattggaagagttgcaggcaacaa |
30618714 |
T |
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