View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_14 (Length: 456)
Name: NF19113_low_14
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_14 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 38258517 - 38258087
Alignment:
| Q |
11 |
atcatcaatattaggagttgcagataaatgcattgtctctagcatcacagccttaaaccctttctcatccaaatcatcatccgtatattttttccccaaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38258517 |
atcaccaatattaggagttgcagataaatgcattgtctctagcatcacagccttaaaccctttctcatccaaatcatcatccgtatattttttccccaaa |
38258418 |
T |
|
| Q |
111 |
accattctacaactcatatcagcagtgagtgtagaaaccttagtgcttaaatcaacctttgttctatcattggctttttctcttaaaaactttatcaata |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38258417 |
accattctacaactcatatcagcagtgagtgtagaaaccttggtgcttaaatcaacctttgttctatcattggtcttttctcttaaaaactttatcaata |
38258318 |
T |
|
| Q |
211 |
ggtcaagttcttgttccctcatggttttaaatgaatttatttttgcatggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaacc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38258317 |
ggtcaagttcttgttccctcatggttttaaatgaatttatttttgcatggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaacc |
38258218 |
T |
|
| Q |
311 |
atattcaccaaaactcaagttcctccgatcccaaccgatgat-ttttgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38258217 |
atattcaccaaaactcaagttcctccgatcccaaccgatgattttttgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaa |
38258118 |
T |
|
| Q |
410 |
aagttcagcagcttgaggtgaagaaacaact |
440 |
Q |
| |
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||||||||| ||||||||||||||||||||| |
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| T |
38258117 |
aagttcagctgcttgaggtgaagaaacaact |
38258087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 38262267 - 38261844
Alignment:
| Q |
11 |
atcatcaatattaggagttgcagataaatgcattgtctctagcatcacagccttaaaccctttctcatccaaatcatcatccgtatattttttccccaaa |
110 |
Q |
| |
|
|||| ||||||||||||| || | |||||||||| |||| |||| ||||||||||||||||||||||||||||| | ||| |||| |||||||| ||| |
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|
| T |
38262267 |
atcaccaatattaggagtagctgctaaatgcattccctcttgcataacagccttaaaccctttctcatccaaatccttatctatatactttttccctaaa |
38262168 |
T |
|
| Q |
111 |
accattctacaactcatatcagcagtgagtgtagaaaccttagtgcttaaatcaacctttgttctatcattggctttttctcttaaaaactttatcaata |
210 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |||| ||||||||||||||||||| ||||| |||||| | |||| ||||||||| |
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|
| T |
38262167 |
accattctacaactcatatcagccgcgagtgtagaaactttagcacttaaatcaacctttgttccgtcattagctttt------agaaacattatcaata |
38262074 |
T |
|
| Q |
211 |
ggtcaagttcttgttccctcatggttttaaatgaatttatttttgcatggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaacc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
38262073 |
ggtcaagttcttgttccctcatggttttaaatgaatttatttttgcatggctcaacaattctaaagtgcacatttttctcatatttcgccaataagaacc |
38261974 |
T |
|
| Q |
311 |
atattcaccaaaactcaagttcctccgatcccaaccgatgatttttgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaaa |
410 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| ||| |||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
38261973 |
atattcaccaaaactcaagttcctctggtcccaagagattatttttgctgccaaatgaggtggtctacttgcaaagacaagatcatgagttttgaggaaa |
38261874 |
T |
|
| Q |
411 |
agttcagcagcttgaggtgaagaaacaact |
440 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |
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| T |
38261873 |
agttcagctgcttgaggtgatgaaacaact |
38261844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 27412307 - 27411878
Alignment:
| Q |
11 |
atcatcaatattaggagttgcagataaatgcattgtctctagcatcacagccttaaaccctttctcatccaaatcatcatccgtatattttttccccaaa |
110 |
Q |
| |
|
|||| |||| ||||||||||| | |||| |||| |||| ||||| |||||| || || ||||||| |||||| | |||| ||| |||||||| ||| |
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| T |
27412307 |
atcagcaatgttaggagttgctgctaaactcattaactcttgcatcgaagccttgaatcccttctcattcaaatccttgtccgaatactttttcccaaaa |
27412208 |
T |
|
| Q |
111 |
accattctacaactcatatcagcagtgagtgtagaaaccttagtgcttaaatcaacctttgttctatcattggctttttctcttaaaaactttatcaata |
210 |
Q |
| |
|
|| ||| | ||| |||||||||| || |||| || |||||| | |||| ||||||| |||||| |||||||||| |||||||| |||||| ||||||| |
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|
| T |
27412207 |
actattatgcaagtcatatcagctgtaagtgcagcaaccttggcacttatatcaaccgttgttccatcattggctgcttctcttataaacttgatcaata |
27412108 |
T |
|
| Q |
211 |
ggtcaagttcttgttccctcatggttttaaatgaatttatttttgcatggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaacc |
310 |
Q |
| |
|
||||||| |||||||||||||| || |||| || ||||||| |||||||||||||||||| |||||||| || | ||||||||||||||| ||||| |
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|
| T |
27412107 |
ggtcaagctcttgttccctcatacttctaaaactgttgatttttgtatggctcaacaattctaatgtgcacatcttgcgcatgtttcgccaatacgaacc |
27412008 |
T |
|
| Q |
311 |
atattcaccaaaactcaagttcctccgatcccaaccgatgatttttgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaaa |
410 |
Q |
| |
|
||| ||| || |||| | | || ||| || |||| || |||||||||||| |||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
27412007 |
gtatacactgaagctcacatccttctgattgtaaaacatgagttgtgctgcctcaataggtggtctacttgcaaagacaatatcatgagtcttgaggaag |
27411908 |
T |
|
| Q |
411 |
agttcagcagcttgaggtgaagaaacaact |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27411907 |
agttcagcagcttgaggtgaagaaacaact |
27411878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 102 - 440
Target Start/End: Complemental strand, 5013 - 4677
Alignment:
| Q |
102 |
ttccccaaaaccattctacaactcatatcagcagtgagtgtagaaaccttagtgcttaaatcaacctttgttctatcattggctttttctcttaaaaact |
201 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||| ||||||| |||||| |||||||||| |||| | | ||||| |
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|
| T |
5013 |
ttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcacttatatcaaccgttgttccatcattggctgcttctttcataaact |
4914 |
T |
|
| Q |
202 |
ttatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttgcatggctcaacaattctaaagtgcacatttttctcatgtttcgcca |
301 |
Q |
| |
|
| |||||||||||||| || ||| ||||||| || |||| ||| ||||||| |||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
4913 |
tgatcaataggtcaag--ctcgtttcctcatgcttctaaaactattgatttttgaatggctcaacaattctaacgtgcacatcttgtgcatgtttcgcca |
4816 |
T |
|
| Q |
302 |
ataagaaccatattcaccaaaactcaagttcctccgatcccaaccgatgatttttgctgcctcaattggtggtctgcttgcaaagacaagatcatgagtc |
401 |
Q |
| |
|
||||||||| ||| ||| ||||||| | || ||| || |||| |||| |||||||| |||||||| || ||||||| ||||||||||||| |
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|
| T |
4815 |
ataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagagaagatcatgagtc |
4716 |
T |
|
| Q |
402 |
ttgaggaaaagttcagcagcttgaggtgaagaaacaact |
440 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4715 |
ttgaggaagagttcagcagcttgaggtgaagaaacaact |
4677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 59 - 440
Target Start/End: Original strand, 8423 - 8804
Alignment:
| Q |
59 |
agccttaaaccctttctcatccaaatcatcatccgtatattttttccccaaaaccattctacaactcatatcagcagtgagtgtagaaaccttagtgctt |
158 |
Q |
| |
|
|||||| || || ||||||| |||||| | |||| ||| |||||||| ||||| ||| | ||| |||||||| | || |||| || |||||| | ||| |
|
|
| T |
8423 |
agccttgaatcccttctcattcaaatccttgtccgaatactttttcccaaaaactattatgcaagtcatatcaactgtaagtgcagcaaccttggcactt |
8522 |
T |
|
| Q |
159 |
aaatcaacctttgttctatcattggctttttctcttaaaaactttatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttgcat |
258 |
Q |
| |
|
| ||||||| |||||| |||||||||| |||||||| |||||| |||||||||||||| |||||||||||||| || |||| || ||||||| || |
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|
| T |
8523 |
atatcaaccgttgttccatcattggctgcttctcttataaacttgatcaataggtcaagctcttgttccctcataattctaaaactgttgatttttgaat |
8622 |
T |
|
| Q |
259 |
ggctcaacaattctaaagtgcacatttttctcatgtttcgccaataagaaccatattcaccaaaactcaagttcctccgatcccaaccgatgatttttgc |
358 |
Q |
| |
|
|||||||||||||||| |||||||| || | ||||||||||||||| ||||| ||| ||| || || | | | || ||| || |||| || | | |
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|
| T |
8623 |
ggctcaacaattctaatgtgcacatcttgcgcatgtttcgccaatatgaaccgtatacactgaagctaacatccttctgattataaaacatgaattatac |
8722 |
T |
|
| Q |
359 |
tgcctcaattggtggtctgcttgcaaagacaagatcatgagtcttgaggaaaagttcagcagcttgaggtgaagaaacaact |
440 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
8723 |
tgcctcaataggtggtctacttgcaaagacaaaatcatgagtcttgagaaagagttcagcagcttgaggtgaagaaacaact |
8804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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