View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_15 (Length: 430)
Name: NF19113_low_15
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 3781302 - 3781604
Alignment:
| Q |
1 |
tgtcttgtttttctgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggttgg |
100 |
Q |
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| T |
3781302 |
tgtcttgtttttctgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggttgg |
3781401 |
T |
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| Q |
101 |
gtttgtgagatttttgttaagatgatgaatgtggagaaagtaaagtagtggaggagaaaagaataataatggaggtaaatgaagtgatggtgaggtgatg |
200 |
Q |
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| T |
3781402 |
gtttgtgagatttttgttaagataatgaatgtggagaaagtaaagtagtggaggagaaaagaataataatggaggtaaatgaagtgatggtgaggtgatg |
3781501 |
T |
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| Q |
201 |
aggggtttgtcttgtttataaagagaacaaatatcaaaaagcaagtaatcgaaaaagaacaaacaatggtgtagaacgtagggaaaagtatttttcttta |
300 |
Q |
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| T |
3781502 |
aggggtttgtcttgtttataaagagaacaaatatcaaaaagcaagtaaacgaaaaagaacaaacaacggagtagaacgtaggcaaaagtatttttcttta |
3781601 |
T |
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| Q |
301 |
ttt |
303 |
Q |
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||| |
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| T |
3781602 |
ttt |
3781604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 3767318 - 3767417
Alignment:
| Q |
1 |
tgtcttgtttttctgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaag---tgaggaaatgttgggaaggcattgtggt |
97 |
Q |
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| T |
3767318 |
tgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcattatggt |
3767417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 3777006 - 3777082
Alignment:
| Q |
21 |
gttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggt |
97 |
Q |
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| T |
3777006 |
gttgaagaagtgagtgtgttacaagagataagaaggaagaagaacaaagtgaggaaatgtttggaagacattgtggt |
3777082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 3746134 - 3746220
Alignment:
| Q |
14 |
tgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaaggcattgtggttgggtt |
103 |
Q |
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| T |
3746134 |
tgatgaagttgaagt---gagggtgttgcaagagaagagaaggaagaagaaaaaagtgaggaagtgttgggtaggcatggtggtggggtt |
3746220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 3751963 - 3752016
Alignment:
| Q |
29 |
agtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttg |
82 |
Q |
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| T |
3751963 |
agtgagagtgttgcaagagaggagaaggaagaagaacaaagtgagaaaatgttg |
3752016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 3762943 - 3763000
Alignment:
| Q |
30 |
gtgagtgtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttgggaag |
87 |
Q |
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| T |
3762943 |
gtgagggtgttgcaagaaagtagaaggaagaagaacaaagtgaggaaatgtttggaag |
3763000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 3755837 - 3755885
Alignment:
| Q |
36 |
gtgttgcaagatatgagaaggaagaagaacaaagtgaggaaatgttggg |
84 |
Q |
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| T |
3755837 |
gtgttgcaagaaagaagaaggaagaagaacaaagtgatgaagtgttggg |
3755885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 410
Target Start/End: Original strand, 21018059 - 21018102
Alignment:
| Q |
367 |
ttaacaacatttaaatagtaaatttttaaagaaattgatgcatt |
410 |
Q |
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| T |
21018059 |
ttaacaacctttaaatagtaaatttttatagaaattgattcatt |
21018102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 411
Target Start/End: Original strand, 16843775 - 16843824
Alignment:
| Q |
362 |
actcattaacaacatttaaatagtaaatttttaaagaaattgatgcattt |
411 |
Q |
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| T |
16843775 |
actctttaacaatctttaaatagtaagtttttatagaaattgatgcattt |
16843824 |
T |
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