View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19113_low_16 (Length: 429)

Name: NF19113_low_16
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19113_low_16
NF19113_low_16
[»] chr1 (4 HSPs)
chr1 (17-411)||(33769005-33769399)
chr1 (17-411)||(33772287-33772687)
chr1 (143-411)||(33764145-33764413)
chr1 (17-103)||(33764468-33764554)
[»] chr4 (3 HSPs)
chr4 (247-401)||(41238474-41238628)
chr4 (226-343)||(49465214-49465331)
chr4 (226-336)||(8349194-8349304)
[»] chr8 (5 HSPs)
chr8 (235-359)||(25224812-25224936)
chr8 (235-361)||(26168446-26168572)
chr8 (226-335)||(26396048-26396157)
chr8 (226-339)||(1093114-1093227)
chr8 (245-335)||(15688402-15688492)
[»] chr7 (4 HSPs)
chr7 (226-369)||(29462850-29462993)
chr7 (226-337)||(19844605-19844716)
chr7 (250-343)||(19890486-19890579)
chr7 (224-274)||(19877567-19877617)
[»] chr2 (2 HSPs)
chr2 (247-305)||(28642196-28642254)
chr2 (245-305)||(28691399-28691459)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 33769399 - 33769005
Alignment:
Q  17 tgaaagcctttgaagaatcaaaaaccggcgtgaaaggcctcttagaatctggaatatgtacgacaaagatcccacgtatgtttcattctcccaatttgaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33769399 tgaaagcctttgaagaatcaaaaaccggcgtgaaaggcctcttagaatctggaatatggacgacaaagatcccacgtatgtttcattctcccaatttgaa 33769300  T
Q  117 cttgaactctgatcatgaaagtgaagcatcttccaagttcagtgtccctatcatagaccttcaagatataaacactgatccatgtttacatgctgaggta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33769299 cttgaactctgatcatgaaagtgaagcatcttccaagttcagtgtccctatcatagaccttcaagatataaacactgatccatgtttacatgctgaggta 33769200  T
Q  217 cttgagaagattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  33769199 cttgagaagattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccggttattgttttggatgagatgattagtggaatcc 33769100  T
Q  317 gtaggtttcatgaacaagatgctgatgcaaggaaaccattttatacaagggatacaagtaagaaagttcgatatttctctaatggtagccttttt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33769099 gtaggtttcatgaacaagatgctgatgcaaggaaaccattttatacaagggataaaagtaagaaagttcgatatttctctaatggtagccttttt 33769005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 33772687 - 33772287
Alignment:
Q  17 tgaaagcctttgaagaatcaaaaaccggcgtgaaaggcctcttagaatctggaatatgtacgacaaagatcccacgtatgtttcattctcccaatttgaa 116  Q
    |||||||||||||||||||||||   || |||||||| ||||| |||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||    
T  33772687 tgaaagcctttgaagaatcaaaagttggtgtgaaaggtctcttggaatctggaatatgtgtgacaaagatcccacgtatgttccattatcccaatttgaa 33772588  T
Q  117 cttgaac------tctgatcatgaaagtgaagcatcttccaagttcagtgtccctatcatagaccttcaagatataaacactgatccatgtttacatgct 210  Q
    |||||||      ||   ||||||||||||  ||||||||||||||| |||||| ||||||||||||||| ||||| ||||  | |||||||| ||||||    
T  33772587 cttgaacatgaactccactcatgaaagtgacccatcttccaagttcaatgtccccatcatagaccttcaaaatatacacacaaacccatgtttgcatgct 33772488  T
Q  211 gaggtacttgagaagattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtg 310  Q
    ||||||||||| |||||||||||||| ||    || ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  33772487 gaggtacttgacaagattcgaagtgcttgtcgtgaatggggatgttttcaagtgattaatcatggtattccagatagcgttttggatgagatgattagtg 33772388  T
Q  311 gaatccgtaggtttcatgaacaagatgctgatgcaaggaaaccattttatacaagggatacaagtaagaaagttcgatatttctctaatggtagcctttt 410  Q
    ||||||||||||||||||||||||| || || | |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  33772387 gaatccgtaggtttcatgaacaagaagccgaggaaaggaaaccattctatacaagggatacaagtaagaaagttagatatttctccaatggaagcctttt 33772288  T
Q  411 t 411  Q
    |    
T  33772287 t 33772287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 143 - 411
Target Start/End: Complemental strand, 33764413 - 33764145
Alignment:
Q  143 catcttccaagttcagtgtccctatcatagaccttcaagatataaacactgatccatgtttacatgctgaggtacttgagaagattcgaagtgcatgcaa 242  Q
    ||||||| |||||  ||||||| ||||| |||||||||||||| |||||| |||||||||| |||| ||||||| |||| || ||||| |||||||||||    
T  33764413 catcttcaaagttgtgtgtccccatcattgaccttcaagatatgaacactaatccatgtttgcatgttgaggtagttgacaaaattcgtagtgcatgcaa 33764314  T
Q  243 ggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaagatgctgat 342  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||||||| | ||||    
T  33764313 ggagtggggatttttccaagtgattaatcatggtattccggttagtgttttggatgagatgactagcgcaatccgtaggtttcatgaacaagaagttgat 33764214  T
Q  343 gcaaggaaaccattttatacaagggatacaagtaagaaagttcgatatttctctaatggtagccttttt 411  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||| |||||||    
T  33764213 gcaaggaaaccattttatacaagggatacaagtaagaaagtcagatatttttctaatggtacccttttt 33764145  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 33764554 - 33764468
Alignment:
Q  17 tgaaagcctttgaagaatcaaaaaccggcgtgaaaggcctcttagaatctggaatatgtacgacaaagatcccacgtatgtttcatt 103  Q
    ||||||| ||||| ||||||||| | || || ||||||||| |||||||||||| |||   ||||||||||||||||||||| ||||    
T  33764554 tgaaagcttttgacgaatcaaaagctggtgtaaaaggcctcgtagaatctggaacatgcgtgacaaagatcccacgtatgttccatt 33764468  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 247 - 401
Target Start/End: Original strand, 41238474 - 41238628
Alignment:
Q  247 tggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaagatgctgatgcaa 346  Q
    ||||||||||| |||||||| ||||||||||||||| ||  |||||||||||||||||| | ||||||  |||| |||||||||||||||||||| || |    
T  41238474 tggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttcatgaacaagatgctgaagcta 41238573  T
Q  347 ggaaaccattttatacaagggatacaagtaagaaagttcgatatttctctaatgg 401  Q
     |||||| |||||  |||| |||| |  |||||||||| | ||||||||||||||    
T  41238574 agaaacccttttactcaagagataaagataagaaagttaggtatttctctaatgg 41238628  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 49465331 - 49465214
Alignment:
Q  226 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttc 325  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||  |||||  |||  || |||||||| ||||||  |||||||||||| ||||    
T  49465331 attcgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcccattaccgtcttggatgaaatgattgatggaatccgtagctttc 49465232  T
Q  326 atgaacaagatgctgatg 343  Q
    ||||||||||||||||||    
T  49465231 atgaacaagatgctgatg 49465214  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 226 - 336
Target Start/End: Original strand, 8349194 - 8349304
Alignment:
Q  226 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttc 325  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||  ||| ||| |||||||| |  |||  |||||| ||||||||||    
T  8349194 attcgaactgcatgcaaggagtggggattttttaaagtgattaatcatggaattcccattaatgtattggatgaaacaattgatggaattcgtaggtttc 8349293  T
Q  326 atgaacaagat 336  Q
    |||||||||||    
T  8349294 atgaacaagat 8349304  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 359
Target Start/End: Complemental strand, 25224936 - 25224812
Alignment:
Q  235 gcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaag 334  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||| |||||||| |  |||| |||||| |||||||||||||||||||    
T  25224936 gcatgcaaggagtagggattttttcaagtgattaatcatggaattccaattaatgtattggatgaaacaattaatggaattcgtaggtttcatgaacaag 25224837  T
Q  335 atgctgatgcaaggaaaccatttta 359  Q
    || |||| | ||| |||| ||||||    
T  25224836 atcctgaagtaagaaaacaatttta 25224812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 235 - 361
Target Start/End: Original strand, 26168446 - 26168572
Alignment:
Q  235 gcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaag 334  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  ||  ||| |||||||| |  |||  |||||| |||||||||||||||||||    
T  26168446 gcatgcaaggagtggggattttttcaagtgattaatcatggaattcccattgatgtattggatgaaacaattgatggaattcgtaggtttcatgaacaag 26168545  T
Q  335 atgctgatgcaaggaaaccattttata 361  Q
    || | || | |||||||| ||||||||    
T  26168546 atcccgaagtaaggaaacaattttata 26168572  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 226 - 335
Target Start/End: Original strand, 26396048 - 26396157
Alignment:
Q  226 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttc 325  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||  |||||  || |||| |||||||| ||| ||  |||| | ||||||||||    
T  26396048 attcgaactgcatgtaaggagtggggattttttcaagtgattaatcatgaaattcccatttgtgtattggatgaaatgcttgatggatttcgtaggtttc 26396147  T
Q  326 atgaacaaga 335  Q
    ||||||||||    
T  26396148 atgaacaaga 26396157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 339
Target Start/End: Original strand, 1093114 - 1093227
Alignment:
Q  226 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttc 325  Q
    |||| |||||||||| | |||||||||||||||||  | ||||||||||  |||||  ||| ||| |||||||| ||||||  ||||||  ||| |||||    
T  1093114 attcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgattgatggaattagtaagtttc 1093213  T
Q  326 atgaacaagatgct 339  Q
    | ||||||||||||    
T  1093214 acgaacaagatgct 1093227  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 335
Target Start/End: Complemental strand, 15688492 - 15688402
Alignment:
Q  245 agtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaaga 335  Q
    |||||||||| ||||||||| | || ||||||||||||  || |||||||||||| ||||||  |||| |   ||| ||||||||||||||    
T  15688492 agtggggattctttcaagtggtcaaccatggtattccatctactgttttggatgaaatgattgatggagtggttagatttcatgaacaaga 15688402  T

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Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 29462850 - 29462993
Alignment:
Q  226 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttc 325  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||  |||||  ||| ||| |||||||| ||||||  ||||||| |||||||||    
T  29462850 attcgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcctattattgtcttggatgaaatgattgatggaatctgtaggtttc 29462949  T
Q  326 atgaacaagatgctgatgcaaggaaaccattttatacaagggat 369  Q
    ||||||||||||| |||| ||| |||   ||||||||| |||||    
T  29462950 atgaacaagatgccgatgtaagaaaagagttttatacacgggat 29462993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 337
Target Start/End: Original strand, 19844605 - 19844716
Alignment:
Q  226 attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttc 325  Q
    ||||||||||||||  | ||||||||||||||||| |||||||||||||  |||||  | | ||| |||||||||||||||  |||||||||||  ||||    
T  19844605 attcgaagtgcatgtcatgagtggggattttttcaggtgattaatcatgaaattcccatcaatgtattggatgagatgattcatggaatccgtaactttc 19844704  T
Q  326 atgaacaagatg 337  Q
    ||||||||||||    
T  19844705 atgaacaagatg 19844716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 19890486 - 19890579
Alignment:
Q  250 ggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgattagtggaatccgtaggtttcatgaacaagatgctgatg 343  Q
    ||||||||||| || |||||||||| ||||||  ||  ||| |||||||| ||||||  |||||||||||| |||||||||||||||| |||||    
T  19890486 ggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatg 19890579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 19877617 - 19877567
Alignment:
Q  224 agattcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatg 274  Q
    |||||| ||| || ||||| |||||||||||||||||||||||||||||||    
T  19877617 agattcaaagagcctgcaatgagtggggattttttcaagtgattaatcatg 19877567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 28642254 - 28642196
Alignment:
Q  247 tggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgat 305  Q
    |||||||| |||||||| || |||||||| |||||||||  ||||||||||||||||||    
T  28642254 tggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgat 28642196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 28691459 - 28691399
Alignment:
Q  245 agtggggattttttcaagtgattaatcatggtattccagttagtgttttggatgagatgat 305  Q
    |||||||||| |||||||| || |||||||| ||| ||| |  ||||||||||||||||||    
T  28691459 agtggggattctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgat 28691399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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