View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_17 (Length: 420)
Name: NF19113_low_17
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_17 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 23067685 - 23067890
Alignment:
| Q |
21 |
taaaaaataataattaatacttaccaatacaccaccaaatccgacgaatgttgttcggtgtctctgcggtgagggtgaacccgacgatgagggtaggtat |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23067685 |
taaaaaataataattaatacttaccaatacaccaccgaatctgacgaatgttgttcggtgtctctgcggtgagggtgaacccggcgatgagggtaggtat |
23067784 |
T |
|
| Q |
121 |
ctcagcaaagataaagactatgattcacaaatcagaatagattctcgagatcttcaactacaataaacaatttcaattttagcatacataaactatattg |
220 |
Q |
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||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
23067785 |
ctcagcaaagaaaaatactatgattcacaaatcacaatagattctcgagatcttcaactacaataaacaatttcgattttagcatacataaattatattg |
23067884 |
T |
|
| Q |
221 |
gcagag |
226 |
Q |
| |
|
|||||| |
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|
| T |
23067885 |
gcagag |
23067890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 23067955 - 23068038
Alignment:
| Q |
291 |
gaagaacctttggatttaattcaaatatcaaacatcattcaatgcttcaacaaaaaccagtttgtggttcaccccaaagaaaaa |
374 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
23067955 |
gaagaaccttttgatttaattcaaatatcaaacatcattcaatgcttcaacaaaaaccagtttgcggttcacctcaaagaaaaa |
23068038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 28705410 - 28705627
Alignment:
| Q |
9 |
gaaaagaaaatctaaaaaataataattaatacttaccaatacaccaccaaatccgacgaatgttgttcggtgtctctgcggtgagggtgaacccgacgat |
108 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| | |||| |
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| T |
28705410 |
gaaaagaaaatctaaaatataataattaatacttaccaatacaccaccgaatccgacgaatgttgttcggtgtctctacggtgagggtgaacttggcgat |
28705509 |
T |
|
| Q |
109 |
gagggtaggtatctcagcaaagataaagactatgattcacaaatcagaatagattctcgagatcttcaactacaataaacaatttcaattttagcataca |
208 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
28705510 |
gagggtaggtatctcagcaaagaaaaagactatgattcacaaatcacaatagattcttgaaatcttcaactacaataaacaatttcgattttagcataca |
28705609 |
T |
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| Q |
209 |
taaactatattggcagag |
226 |
Q |
| |
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|||||||||||||||||| |
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| T |
28705610 |
taaactatattggcagag |
28705627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 26908598 - 26908803
Alignment:
| Q |
21 |
taaaaaataataattaatacttaccaatacaccaccaaatccgacgaatgttgttcggtgtctctgcggtgagggtgaacccgacgatgagggtaggtat |
120 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || | |||| || |||||||||| ||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
26908598 |
taaataataataattaatacttaccaatacacctccgagtccggcgtatgttgttcgatgtctctgctgtgagggtgaatccgacgatgagggtaggtat |
26908697 |
T |
|
| Q |
121 |
ctcagcaaagataaagactatgattcacaaatcagaatagattctcgagatcttcaactacaataaacaatttcaattttagcatacataaactatattg |
220 |
Q |
| |
|
|||||||| || ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26908698 |
ctcagcaatgaaaaatactctgattcacaaatcgcaatagattctcgagatcttcaactacaataaacaatttcaattttagcatacacaaactatattg |
26908797 |
T |
|
| Q |
221 |
gcagag |
226 |
Q |
| |
|
|||||| |
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|
| T |
26908798 |
gcagag |
26908803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 66 - 226
Target Start/End: Complemental strand, 25809696 - 25809536
Alignment:
| Q |
66 |
gaatgttgttcggtgtctctgcggtgagggtgaacccgacgatgagggtaggtatctcagcaaagataaagactatgattcacaaatcagaatagattct |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
25809696 |
gaatgttgttcggtgtctctgcggtgagggtgaacccggcgatgagggtaggtatctcagcaaagaaaaagactatgattcacaaatcacaatagattct |
25809597 |
T |
|
| Q |
166 |
cgagatcttcaactacaataaacaatttcaattttagcatacataaactatattggcagag |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25809596 |
cgagatcttcaactacaataaacaatttcgattttagcatacataaactatattggcagag |
25809536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 291 - 404
Target Start/End: Complemental strand, 25809471 - 25809358
Alignment:
| Q |
291 |
gaagaacctttggatttaattcaaatatcaaacatcattcaatgcttcaacaaaaaccagtttgtggttcaccccaaagaaaaacgctttgaaaagaaaa |
390 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
25809471 |
gaagaaccttttgatttaatttaaatatcaaacatcattcaatgcttcaacaaaaaccagtttgcggttcaccccaaagaaaaaagctttgaaaagaaaa |
25809372 |
T |
|
| Q |
391 |
atagtcttttaaat |
404 |
Q |
| |
|
|||||||||||||| |
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|
| T |
25809371 |
atagtcttttaaat |
25809358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 291 - 404
Target Start/End: Complemental strand, 136136 - 136024
Alignment:
| Q |
291 |
gaagaacctttggatttaattcaaatatcaaacatcattcaatgcttcaacaaaaaccagtttgtggttcaccccaaagaaaaacgctttgaaaagaaaa |
390 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
136136 |
gaagaaccttttgatttaattcaaatatcaaacatcattcaatgcttcaacaaaaac-agtttgtggttcaccccaaagaaaaatgctttgaaaagaaaa |
136038 |
T |
|
| Q |
391 |
atagtcttttaaat |
404 |
Q |
| |
|
|||||||||||||| |
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|
| T |
136037 |
atagtcttttaaat |
136024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 15024503 - 15024455
Alignment:
| Q |
174 |
tcaactacaataaacaatttcaattttagcatacataaactatattggc |
222 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
15024503 |
tcaactacaataaacattttcaattttagcataaataaaatatattggc |
15024455 |
T |
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