View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19113_low_18 (Length: 410)
Name: NF19113_low_18
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 1028242 - 1028403
Alignment:
| Q |
103 |
accaacatttaaatatcatttaaaataccaga----gataccaaatacgatcgatgttagcccttggaagcaaaagctcatggtcatctttgttctcatg |
198 |
Q |
| |
|
||||||||||||| |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1028242 |
accaacatttaaaaatcattcgaaataccagacagagataccaaatacgatcgatgttggcccttggaagcaaaagctcatggtcatctttgttctcatg |
1028341 |
T |
|
| Q |
199 |
agttcaacgattacttcatcagtgctggctcgtaaatacaaaagaaaattagttgacttttg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1028342 |
agttcaacgattacttcatcagtgctggctcgtaaatacaaaagaaaattagttgacttttg |
1028403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 1033609 - 1033688
Alignment:
| Q |
258 |
ttggtgattgctggcagttgctgcttccaaattctgcttcatttctatgggaaggtctgtgtagaagacgttcattggaa |
337 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
1033609 |
ttggtgattcctggcagttgctgcttccaaattctgcttcatttctgtgggaagatcttggtagaagacgttcattggaa |
1033688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 1032773 - 1032819
Alignment:
| Q |
40 |
gaattataattagcatacaaa---gtacacgcacgaacaaagtaaaa |
83 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
1032773 |
gaattataattagcatacaaaaaagtacacgcacgaacaaagaaaaa |
1032819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 260 - 389
Target Start/End: Complemental strand, 50832502 - 50832377
Alignment:
| Q |
260 |
ggtgattgctggcagttgctgcttccaaattc---tgcttcatttctatgggaaggtctgtgtagaagacgttcattggaagttggaactcttggtagat |
356 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| |||||||||||| ||||||| ||| |||| ||||||| ||||||| |||||||||||| |
|
|
| T |
50832502 |
ggtgattcctggcagttgctgcttccgaattccgctgcttcatttctgtgggaagatcttggtaggagacgtttattggaa-------ctcttggtagat |
50832410 |
T |
|
| Q |
357 |
ggaactgacccaatgaaatccctgaagtacgat |
389 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
50832409 |
ggaactgacccaatgaaatcgctgaagtacgat |
50832377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 4516149 - 4516227
Alignment:
| Q |
258 |
ttggtgattgctggcagttgctgcttccaaattctgcttcatttctatgggaaggtctgtgtagaagacgttcattgga |
336 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
4516149 |
ttggtgattcctggcagctgctgcttccaaattctgcttcatttctgtgggaagatcttggtagaagacgttcattgga |
4516227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University