View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_22 (Length: 378)
Name: NF19113_low_22
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_22 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 393176 - 392799
Alignment:
| Q |
1 |
aataaatacatataacagtataaggtaccaatctgcgtgtctggaatgaagcgagtatttaaataaatgatacattacacatctaatcaatgccattact |
100 |
Q |
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| T |
393176 |
aataaatacatataacagtataaagtacccagatgcgtgtctggaatgaagcgaatatttaaataaatgatacaatacacatctaatcaatgccattact |
393077 |
T |
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| Q |
101 |
tatgattgacttccctgctcaagaaggttctgtgtgtttggattcttgccccaggctctctccttccatattaactccacttcatcaaacgttaatcctt |
200 |
Q |
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| T |
393076 |
tatgattgacttccctgctcaagaaggttctgtgtgtttggattcttgccccaggctctctccttccatattaactccacttcatcaaacgttaatcctt |
392977 |
T |
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| Q |
201 |
gagtctctggaacatacagaagtacaaagagaaatgccaccacagctataacagcaataatcaagaaagttgaagcaatcccgatagcgtcagcaatcga |
300 |
Q |
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| T |
392976 |
gagtctctggaacatacagaagtacaaagagaaatgccaccacagctataacagcaataatcaagaaagttgaagcaatcccgatagcgtcagcaatcga |
392877 |
T |
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| Q |
301 |
aagaaagctctcggacacgatcaaatttgaaatccaacacacggtcgctgccatgcccccacatatacctcgatattc |
378 |
Q |
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| T |
392876 |
aagaaagctctcggacacgatcaaatttgaaatccaacacacggtcgctgccatgcccccacatatacctcgatattc |
392799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 378
Target Start/End: Original strand, 52770780 - 52771010
Alignment:
| Q |
148 |
gccccaggctctctccttccatattaactccacttcatcaaacgttaatccttgagtctctggaacatacagaagtacaaagagaaatgccaccacagct |
247 |
Q |
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| T |
52770780 |
gccccaagctctctctttccatattagttcaacctcgtcaaaggtcaatcctttagtctccggaacatagagaagcacaaataaaaaggcaagcacggtt |
52770879 |
T |
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| Q |
248 |
ataacagcaataatcaagaaagttgaagcaatcccgatagcgtcagcaatcgaaagaaagctctcggacacgatcaaatttgaaatccaacacacggtcg |
347 |
Q |
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| T |
52770880 |
attacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtag |
52770979 |
T |
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| Q |
348 |
ctgccatgcccccacatatacctcgatattc |
378 |
Q |
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| T |
52770980 |
ctgacataccaccacaaattcctctatattc |
52771010 |
T |
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