View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_24 (Length: 335)
Name: NF19113_low_24
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 40451038 - 40451171
Alignment:
| Q |
4 |
gtttaatttccaatggataagggatatgtcatttggagttcaagatgaaaactaaataaagttggattaacaaaag-ttgatatatctgatttaaaattt |
102 |
Q |
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| T |
40451038 |
gtttaatttccaatggataagggatatgtcatttggagtttaagatgaaaactaaataaagttggatcaacaaaagtttgatatatttgatttaaaattt |
40451137 |
T |
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| Q |
103 |
gaatcggacacatcaactttaataactcaactgt |
136 |
Q |
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| T |
40451138 |
gtatcggacacatcaactttaataactcaactgt |
40451171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 40451171 - 40451275
Alignment:
| Q |
212 |
tgtagaatgtaaccaaattttcaattctaaaaaggattttaagacaccttggtatactatcaagtggcttggtaagtgctagtactgaattcataagcca |
311 |
Q |
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| T |
40451171 |
tgtagaatgtaaccaaattttcaattctaaaaaggattttaggacaccttggtatactatcaagtggcttggtaagtgctagtactgaattcataagcca |
40451270 |
T |
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| Q |
312 |
tgccc |
316 |
Q |
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| T |
40451271 |
tgccc |
40451275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 48729577 - 48729644
Alignment:
| Q |
72 |
aacaaaagttgatatatctgatttaaaatttgaatcggacacatcaac-tttaataactcaactgtct |
138 |
Q |
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| T |
48729577 |
aacaaaagttgatatatctaattcaaaattttaatcagatacatcaacttttattaactcaaatgtct |
48729644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 21537961 - 21537911
Alignment:
| Q |
72 |
aacaaaagttgatatatctgatttaaaatttgaatcggacacatcaacttt |
122 |
Q |
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| T |
21537961 |
aacaaaagttgatgtatctgaactaaaatttgaatcagatacatcaacttt |
21537911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 26026888 - 26026856
Alignment:
| Q |
61 |
aaagttggattaacaaaagttgatatatctgat |
93 |
Q |
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| T |
26026888 |
aaagttgggttaacaaaagttgatatatctgat |
26026856 |
T |
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