View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19113_low_25 (Length: 331)

Name: NF19113_low_25
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19113_low_25
NF19113_low_25
[»] chr5 (12 HSPs)
chr5 (4-315)||(3298837-3299148)
chr5 (4-315)||(3391730-3392041)
chr5 (4-239)||(1164208-1164437)
chr5 (22-239)||(1849347-1849558)
chr5 (22-92)||(39879188-39879258)
chr5 (22-92)||(40411893-40411963)
chr5 (22-108)||(39725788-39725874)
chr5 (22-103)||(38987066-38987147)
chr5 (276-315)||(1164147-1164186)
chr5 (276-315)||(1849580-1849619)
chr5 (266-315)||(38987301-38987350)
chr5 (266-315)||(39726023-39726072)
[»] chr4 (1 HSPs)
chr4 (34-91)||(25912945-25913002)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 3298837 - 3299148
Alignment:
Q  4 ggaggaagggtgggttggtgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatctt 103  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3298837 ggaggaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggaccaatctt 3298936  T
Q  104 actatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3298937 actatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtca 3299036  T
Q  204 atcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttg 303  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3299037 atcttatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaagatgcattttttctgttgaaatcgtcccaatttg 3299136  T
Q  304 ttgcggggattt 315  Q
    ||||||||||||    
T  3299137 ttgcggggattt 3299148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 3391730 - 3392041
Alignment:
Q  4 ggaggaagggtgggttggtgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatctt 103  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  3391730 ggaggaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggaccaatttt 3391829  T
Q  104 actatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtca 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3391830 actaagcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtca 3391929  T
Q  204 atcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttg 303  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3391930 atcttatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaagatgcattttttctgttgaaatcgtcccaatttg 3392029  T
Q  304 ttgcggggattt 315  Q
    ||||||||||||    
T  3392030 ttgcggggattt 3392041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 1164437 - 1164208
Alignment:
Q  4 ggaggaagggtgggttggtgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatctt 103  Q
    ||||||||| |||  || |||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||| | |||||    
T  1164437 ggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtttggaaccatctt 1164338  T
Q  104 actatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtca 203  Q
      |||  || |  || ||  ||||||| || |||| ||| ||||      |||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  1164337 ggtatcgttggaaattttcggagaatcgaatacaacatcaatga------aggtttgtctttctatttcaatagcttatctgatgctgcggaagttgtca 1164244  T
Q  204 atcttatagtggacatacttccttccaaggttcagt 239  Q
    ||||||||||||||||||||||| || |||||||||    
T  1164243 atcttatagtggacatacttcctgcccaggttcagt 1164208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 1849347 - 1849558
Alignment:
Q  22 tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttactatgcttagtcatatt 121  Q
    |||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||| || | ||||   ||| |||    | |||    
T  1849347 tgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtttcgaaccatctcggtatccttgaaaagatt 1849446  T
Q  122 atgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatac 221  Q
      |||||||||| |||| ||||||      ||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||  || |||||    
T  1849447 cggagaatcaaatacaacatcgat------gaaggtttgtctttctgtttcaatagcatatctgatgctgcgaaagttgtcaatcttataacgggcatac 1849540  T
Q  222 ttccttccaaggttcagt 239  Q
    ||||| ||  ||||||||    
T  1849541 ttcctgccctggttcagt 1849558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 39879188 - 39879258
Alignment:
Q  22 tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgttt 92  Q
    |||| |||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  39879188 tgttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgttt 39879258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 40411893 - 40411963
Alignment:
Q  22 tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgttt 92  Q
    |||| |||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  40411893 tgttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgttt 40411963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 39725788 - 39725874
Alignment:
Q  22 tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttactat 108  Q
    |||| |||| ||||||||||||||| ||| |||||| |||||| | ||||||||||||||||||||||||  |||||||||| ||||    
T  39725788 tgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgaccaatcttgctat 39725874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 38987066 - 38987147
Alignment:
Q  22 tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatctt 103  Q
    |||| |||| ||||||||||||||| ||| |||||| |||||| | ||||||||||||||||||||||||  ||||||||||    
T  38987066 tgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgaccaatctt 38987147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 1164186 - 1164147
Alignment:
Q  276 ttttttctgttgaaatcgtcccaatttgttgcggggattt 315  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  1164186 ttttttctgttgaaatcgtcccaatttgctgcggggattt 1164147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 1849580 - 1849619
Alignment:
Q  276 ttttttctgttgaaatcgtcccaatttgttgcggggattt 315  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  1849580 ttttttctgttgaaatcgtcccaatttgctgcggggattt 1849619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 38987301 - 38987350
Alignment:
Q  266 gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggattt 315  Q
    ||||||| | |||||||||||||||||||||| ||||| |||||||||||    
T  38987301 gaaagataccttttttctgttgaaatcgtccccatttgctgcggggattt 38987350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 39726023 - 39726072
Alignment:
Q  266 gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggattt 315  Q
    ||||||| | |||||||||||||||||||||| ||||| |||||||||||    
T  39726023 gaaagataccttttttctgttgaaatcgtccccatttgctgcggggattt 39726072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 25913002 - 25912945
Alignment:
Q  34 tcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtt 91  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  25913002 tcgtcaacaacatgtttgtcaactgcgtactttctttcatttggagcagatcagcgtt 25912945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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