View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_26 (Length: 319)
Name: NF19113_low_26
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 11572727 - 11572451
Alignment:
| Q |
17 |
agaaacgctgtaataccattgtattagtgcatgtttagattgacagtgatactgatagaattatagtgtgtcacattggtttcgacaaactcagtattat |
116 |
Q |
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| T |
11572727 |
agaaatgctgtaataccattgtattagtgcatgtttagattgacagtgaatctgatagaatt-------gtccccgtggtttcga--------gtattat |
11572643 |
T |
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| Q |
117 |
taagcatgtttggtaagacataacgtaatcatgttactgtcttattaaacatgtttggtaataccattcttagtatcttaccgttgcatttgtacaactg |
216 |
Q |
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| T |
11572642 |
taaacatgtttggtaagatataacataatcatgttactgtcttattaaacatgtttggtaataccattcatagtatcttaccgttgcatttgtacaactg |
11572543 |
T |
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| Q |
217 |
aagctagaaactcgaccctctgcacctcggtagaatctgaagaatggtaagacatgaatgtgcagactttcacacatagttctctgctcctc |
308 |
Q |
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| T |
11572542 |
aagctagaaactcgaccttctgcacctcggtagaatctgaagaatggtaagacatgaatgtgcaaactttcacacatacttctcagctcctc |
11572451 |
T |
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