View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_28 (Length: 309)
Name: NF19113_low_28
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 42151800 - 42151495
Alignment:
| Q |
1 |
taagttatttcaaaccgggtcattttgttattca-cagtat--gatcttttgtgaatcaatttgattgaatgcatgatgcacttttggtgaaaagtttgg |
97 |
Q |
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||||||||||||||||||||||| |||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42151800 |
taagttatttcaaaccgggtcatgttgttattcatcagtatatgaacttttgtgaatcaatttgattgaatgcatgatgcacttttggtgaaaagtttgg |
42151701 |
T |
|
| Q |
98 |
aactttaattgaaataagatttaatttgtatatactgacagtgtaa----------nnnnnnnnnnnagatgtgcatccaatcaaattatcataatgatg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
42151700 |
aactttaattgaaataagatttaatttgtatatactgacagtgtaaaacttttttttttttttttttacatgtgcatccaatcaaattatcataatgatg |
42151601 |
T |
|
| Q |
188 |
ccannnnnnnnagattagtttctaagatatctctaaaaatatttacttgatgtgatttgattgaagtaattatgtgttaccttacctgagtttatccatg |
287 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42151600 |
cca-tttttttagattagtttctaagatatctctaaaaatatttacttgatgtgatttgattgaagtaattatgtgttaccttacctgagtttatccatg |
42151502 |
T |
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| Q |
288 |
tgcagtg |
294 |
Q |
| |
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||||||| |
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| T |
42151501 |
tgcagtg |
42151495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 27048843 - 27048795
Alignment:
| Q |
202 |
ttagtttctaagatatctctaaaaatatttacttgatgtgatttgattg |
250 |
Q |
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| T |
27048843 |
ttagtttctataatatctctaaaactatctacttgatatgatttgattg |
27048795 |
T |
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