View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19113_low_3 (Length: 691)

Name: NF19113_low_3
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19113_low_3
NF19113_low_3
[»] chr1 (11 HSPs)
chr1 (411-672)||(21899653-21899914)
chr1 (254-491)||(17663342-17663579)
chr1 (248-416)||(21899187-21899355)
chr1 (254-491)||(17700400-17700637)
chr1 (525-672)||(17663191-17663338)
chr1 (69-171)||(17699894-17699996)
chr1 (526-672)||(17700742-17700888)
chr1 (70-169)||(17663968-17664067)
chr1 (371-600)||(22666769-22666998)
chr1 (34-63)||(17664119-17664148)
chr1 (254-310)||(22663717-22663773)
[»] chr8 (3 HSPs)
chr8 (417-554)||(44989062-44989199)
chr8 (266-392)||(44989761-44989884)
chr8 (349-400)||(44989252-44989303)
[»] chr4 (1 HSPs)
chr4 (254-389)||(51220073-51220204)
[»] chr7 (1 HSPs)
chr7 (330-410)||(441040-441120)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 411 - 672
Target Start/End: Original strand, 21899653 - 21899914
Alignment:
Q  411 acacaccttgttagcagcacaccttgttccttcatcttctcgctaccatccaccatattgctggaaaccttttgccttttactgtgatggtgattcgcat 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21899653 acacaccttgttagcagcacaccttgttccttcatcttctcgctaccatccaccatattgctggaaaccttttgccttttactgtgatggtgatttgcat 21899752  T
Q  511 caagattggtggtcgatccctcacaacccccgtgagatatatacaacaatgtttctgcagcaatattaagttcttcatcattatcaataaaatgtattct 610  Q
    |||||||||| |||||||||||| |||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21899753 caagattggttgtcgatccctcataacccccacgagatatatacaacactgtttctgcagcaatattaagttcttcatcattatcaataaaatgtcttct 21899852  T
Q  611 ccttggactccgctttttagtcttgtgacatattggtggcaagtactttgacaagtcagtag 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21899853 ccttggactccgctttttagtcttgtgacatattggtggcaagtactttgacaagtcagtag 21899914  T

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Target: chr1; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 254 - 491
Target Start/End: Complemental strand, 17663579 - 17663342
Alignment:
Q  254 aactcttgaccctaattcggtttcaccttcgctaatctttttcttgccttcaatatcacggttagagcctgcaggctccttgcaatcttgtgacttttgc 353  Q
    ||||||||||||||||||||||||| |||||||||  || ||| |||||||||||||| ||||||||||||| || |||||| ||||||||||  ||||     
T  17663579 aactcttgaccctaattcggtttcatcttcgctaacattcttcatgccttcaatatcaaggttagagcctgctggttccttggaatcttgtgatgtttga 17663480  T
Q  354 aaaatcttgtctttgggaatcttcaacctcaacaccaagttcttttcgttgcggcaaacacaccttgttagcagcacaccttgttccttcatcttctcgc 453  Q
    |||||| ||||||| |||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||      
T  17663479 aaaatcgtgtctttaggaatcctcaacttcagcaccaagttcttttcgttgtggcaaacacaccttgttagaagcacaccttgttccttcatcttctcat 17663380  T
Q  454 taccatccaccatattgctggaaaccttttgcctttta 491  Q
    || |||||||| |||||||||||| ||| |||||||||    
T  17663379 tatcatccaccgtattgctggaaatcttctgcctttta 17663342  T

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Target: chr1; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 248 - 416
Target Start/End: Original strand, 21899187 - 21899355
Alignment:
Q  248 catagaaactcttgaccctaattcggtttcaccttcgctaatctttttcttgccttcaatatcacggttagagcctgcaggctccttgcaatcttgtgac 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||| ||     
T  21899187 catagaaactcttgaccctaattcggtttcaccttcgctaatctttttcttgccttcaatatcatggttagagtctacaggttccttgcaatcttgcgat 21899286  T
Q  348 ttttgcaaaatcttgtctttgggaatcttcaacctcaacaccaagttcttttcgttgcggcaaacacac 416  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21899287 ttttgtaaaatcttgtctttaggaatcttcaacctcaacaccaagttcttttcgttgcggcaaacacac 21899355  T

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Target: chr1; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 254 - 491
Target Start/End: Original strand, 17700400 - 17700637
Alignment:
Q  254 aactcttgaccctaattcggtttcaccttcgctaatctttttcttgccttcaatatcacggttagagcctgcaggctccttgcaatcttgtgacttttgc 353  Q
    ||||||||||||||||||||||||| ||| |||||  || ||| |||||||||||||| ||||||||||||| || |||||| ||||||||||  ||||     
T  17700400 aactcttgaccctaattcggtttcatcttagctaacattcttcatgccttcaatatcaaggttagagcctgctggttccttggaatcttgtgatgtttga 17700499  T
Q  354 aaaatcttgtctttgggaatcttcaacctcaacaccaagttcttttcgttgcggcaaacacaccttgttagcagcacaccttgttccttcatcttctcgc 453  Q
    |||||| ||||||| |||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||      
T  17700500 aaaatcgtgtctttaggaatcctcaacttcagcaccaagttcttttcgttgtggcaaacacaccttgttagaagcacaccttgttccttcatcttctcat 17700599  T
Q  454 taccatccaccatattgctggaaaccttttgcctttta 491  Q
    || |||||||| |||||||||||| ||| |||||||||    
T  17700600 tatcatccaccgtattgctggaaatcttctgcctttta 17700637  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 525 - 672
Target Start/End: Complemental strand, 17663338 - 17663191
Alignment:
Q  525 gatccctcacaacccccgtgagatatatacaacaatgtttctgcagcaatattaagttcttcatcattatcaataaaatgtattctccttggactccgct 624  Q
    ||||||||| ||||||| | ||| | ||| |||||||||| |||||||||| ||| ||| ||||||||||||  || | |  ||||||| |||||||| |    
T  17663338 gatccctcataaccccctttagacaaatataacaatgtttttgcagcaatagtaatttcctcatcattatcagcaatacgccttctcctgggactccgtt 17663239  T
Q  625 ttttagtcttgtgacatattggtggcaagtactttgacaagtcagtag 672  Q
    |||| ||||| |   ||||||| |||||||||||||||||||||||||    
T  17663238 ttttggtcttatacgatattggcggcaagtactttgacaagtcagtag 17663191  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 17699894 - 17699996
Alignment:
Q  69 attcacaaaaatagattccaccattgaaagttccaaaaaatgatagtgataagataaaatattctgcattcaactcaactaaataaaagaccaattatta 168  Q
    |||||||||| |||||||||||| |||||||||||||  || |||||||||||||||| |  ||| ||||||| ||||  ||||||||| ||||||||||    
T  17699894 attcacaaaagtagattccaccactgaaagttccaaaccataatagtgataagataaattcctctacattcaaatcaatcaaataaaagcccaattatta 17699993  T
Q  169 tta 171  Q
    |||    
T  17699994 tta 17699996  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 526 - 672
Target Start/End: Original strand, 17700742 - 17700888
Alignment:
Q  526 atccctcacaacccccgtgagatatatacaacaatgtttctgcagcaatattaagttcttcatcattatcaataaaatgtattctccttggactccgctt 625  Q
    |||||||| ||||||| | ||| | ||| |||||||||| |||||||||| ||| ||| ||||||||||||  || | |  ||||||| |||||||| ||    
T  17700742 atccctcataacccccataagacaaatataacaatgtttttgcagcaatagtaatttcctcatcattatcagcaatacgccttctcctgggactccgttt 17700841  T
Q  626 tttagtcttgtgacatattggtggcaagtactttgacaagtcagtag 672  Q
    ||| ||||| |   ||||||| |||||||||||||||||||||||||    
T  17700842 tttggtcttatacgatattggcggcaagtactttgacaagtcagtag 17700888  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 17664067 - 17663968
Alignment:
Q  70 ttcacaaaaatagattccaccattgaaagttccaaaaaatgatagtgataagataaaatattctgcattcaactcaactaaataaaagaccaattattat 169  Q
    |||||||||||| ||||||||| |||||||||  ||  || |||||||||||||||||   ||||||||||| ||||  |||||||||||||||||||||    
T  17664067 ttcacaaaaataaattccaccactgaaagttcgtaaccataatagtgataagataaaaacctctgcattcaaatcaatcaaataaaagaccaattattat 17663968  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 600
Target Start/End: Original strand, 22666769 - 22666998
Alignment:
Q  371 aatcttcaacctcaacaccaagttcttttcgttgcggcaaacacaccttgttagcagcacaccttgttccttcatcttctcgctaccatccaccatattg 470  Q
    |||||| ||||| | ||||||||  ||||  ||| || |||||||||||||||| | ||||  |||||||||||||||| |  || |||||| | |||||    
T  22666769 aatcttgaaccttagcaccaagtgtttttgattgtgggaaacacaccttgttagtatcacatgttgttccttcatcttcacattatcatccatcgtattg 22666868  T
Q  471 ctggaaaccttttgccttttactgtgatggtgattcgcatcaagattggtggtcgatccctcacaacccccgtgagatatatacaacaatgtttctgcag 570  Q
     | |||   |||| || |||||||||| |||||||| ||||||||   |  |  ||||||||| |||||| | | || ||||||| || ||||| | |||    
T  22666869 ttagaatttttttaccatttactgtgaaggtgattcacatcaagaccagcagctgatccctcataacccctgcgggacatatacatcagtgtttttccag 22666968  T
Q  571 caatattaagttcttcatcattatcaataa 600  Q
     |||| ||||||||||||||| || |||||    
T  22666969 taatagtaagttcttcatcatgattaataa 22666998  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 17664148 - 17664119
Alignment:
Q  34 atctaaagttttaattattcacacctgttc 63  Q
    ||||||||||||||||||||||||||||||    
T  17664148 atctaaagttttaattattcacacctgttc 17664119  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 22663717 - 22663773
Alignment:
Q  254 aactcttgaccctaattcggtttcaccttcgctaatctttttcttgccttcaatatc 310  Q
    ||||| ||||||||||||||||||||||||| | || || |||||  ||||||||||    
T  22663717 aactcctgaccctaattcggtttcaccttcgttgattttcttcttttcttcaatatc 22663773  T

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Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 417 - 554
Target Start/End: Complemental strand, 44989199 - 44989062
Alignment:
Q  417 cttgttagcagcacaccttgttccttcatcttctcgctaccatccaccatattgctggaaaccttttgccttttactgtgatggtgattcgcatcaagat 516  Q
    |||||||||| ||||||||| ||||||||||||||  || |||||| ||||||||  ||||   ||||||||||||| | | |||||||| |||||||||    
T  44989199 cttgttagcaacacaccttgctccttcatcttctcattatcatccatcatattgcaagaaagtgtttgccttttactatcacggtgattcacatcaagat 44989100  T
Q  517 tggtggtcgatccctcacaacccccgtgagatatatac 554  Q
    ||   || ||||||||| ||||||| ||||| ||||||    
T  44989099 tgtcagttgatccctcataacccccatgagacatatac 44989062  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 266 - 392
Target Start/End: Original strand, 44989761 - 44989884
Alignment:
Q  266 taattcggtttcaccttcgctaatctttttcttgccttcaatatcacggttagagcctgcaggctccttgcaatcttgtgacttttgcaaaatcttgtct 365  Q
    ||||| ||||||||||||| ||||||| ||||    |||||||||| | ||||||||| |||| |||||||||||||||||  || | |||||||| |||    
T  44989761 taatttggtttcaccttcgttaatcttcttcta---ttcaatatcatgattagagccttcaggttccttgcaatcttgtgatgttagaaaaatcttctct 44989857  T
Q  366 ttgggaatcttcaacctcaacaccaag 392  Q
    || ||| | |||| ||||| |||||||    
T  44989858 ttaggattattcagcctcagcaccaag 44989884  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 349 - 400
Target Start/End: Complemental strand, 44989303 - 44989252
Alignment:
Q  349 tttgcaaaatcttgtctttgggaatcttcaacctcaacaccaagttcttttc 400  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||| |||||    
T  44989303 tttgaaaaatcttgtctttaggattcttcaacctcaacaccaagttgttttc 44989252  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 254 - 389
Target Start/End: Original strand, 51220073 - 51220204
Alignment:
Q  254 aactcttgaccctaattcggtttcaccttcgctaatctttttcttgccttcaatatcacggttagagcctgcaggctccttgcaatcttgtgacttttgc 353  Q
    |||| ||||||||||||| ||||||| |||| ||||||| ||||   |||||||||||   ||||||    || | |||||||||||||||||  ||||     
T  51220073 aactattgaccctaattcagtttcactttcgttaatcttcttct---cttcaatatcattattagaggagtcatgttccttgcaatcttgtgatgtttga 51220169  T
Q  354 aaaatcttgtctttgggaatcttcaacctcaacacc 389  Q
    ||||||| |||||| |||||||| ||||||||||||    
T  51220170 aaaatct-gtctttaggaatcttgaacctcaacacc 51220204  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 441040 - 441120
Alignment:
Q  330 tccttgcaatcttgtgacttttgcaaaatcttgtctttgggaatcttcaacctcaacaccaagttcttttcgttgcggcaa 410  Q
    |||||||||||||||||  |||| ||||||||  |||| ||||| || ||||||||| |||| |||||||| ||| |||||    
T  441040 tccttgcaatcttgtgatgtttgaaaaatcttacctttaggaattttgaacctcaacgccaacttcttttcattgtggcaa 441120  T

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