View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19113_low_30 (Length: 286)

Name: NF19113_low_30
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19113_low_30
NF19113_low_30
[»] chr3 (13 HSPs)
chr3 (19-276)||(27632708-27632965)
chr3 (19-268)||(34517500-34517749)
chr3 (20-265)||(34477972-34478214)
chr3 (19-276)||(34505916-34506154)
chr3 (19-276)||(27617131-27617369)
chr3 (103-241)||(34526708-34526846)
chr3 (22-253)||(34462932-34463159)
chr3 (153-261)||(34474184-34474292)
chr3 (198-273)||(34512162-34512237)
chr3 (198-273)||(27626390-27626465)
chr3 (32-132)||(27626235-27626333)
chr3 (42-110)||(34375769-34375837)
chr3 (219-262)||(34375681-34375724)
[»] chr7 (1 HSPs)
chr7 (71-272)||(15741143-15741341)
[»] chr6 (1 HSPs)
chr6 (71-272)||(1575035-1575233)
[»] chr2 (3 HSPs)
chr2 (49-258)||(10533622-10533829)
chr2 (85-258)||(10526843-10527014)
chr2 (221-265)||(10531311-10531355)
[»] scaffold1215 (1 HSPs)
scaffold1215 (49-258)||(807-1014)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 27632708 - 27632965
Alignment:
Q  19 gttatatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27632708 gttatatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagtt 27632807  T
Q  119 acagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatatagga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27632808 acagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcagcacaaatctgatatagga 27632907  T
Q  219 acagtgaagcagtcactcagataccaattttcaattataactaagtacaatacctatg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27632908 acagtgaagcagtcactcagataccaattttcaattataactaagtacaatacctatg 27632965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 34517500 - 34517749
Alignment:
Q  19 gttatatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34517500 gttatatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagtt 34517599  T
Q  119 acagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatatagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34517600 acagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaagacaaatctgatatagga 34517699  T
Q  219 acagtgaagcagtcactcagataccaattttcaattataactaagtacaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34517700 acagtgaagcagtcactcagataccaattttcaattataactaagtacaa 34517749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 34477972 - 34478214
Alignment:
Q  20 ttatatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagtta 119  Q
    ||||| || ||||||||||||  ||| |||||||||||||||| |  ||   ||||| ||| || ||||||||||||||||||||||||||||||||  |    
T  34477972 ttataccaccataatgaattgatttagataagaatcaaatactacactg---aaactgagctatgttacaattaaagcacataaatcacaagataagcaa 34478068  T
Q  120 cagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaa 219  Q
    ||||||||||| | |||  | | |||  ||||||||||||||||||| |||||||||||||||||| || ||  |||  |||||||||||||||||||||    
T  34478069 cagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggacaaatctgatataggaa 34478168  T
Q  220 cagtgaagcagtcactcagataccaattttcaattataactaagta 265  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||    
T  34478169 cagtgatgcagtcactcagatatcaaatttcaattataactaagta 34478214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 34505916 - 34506154
Alignment:
Q  19 gttatatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagtt 118  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||                 
T  34505916 gttatatcagcataataaattgggttagataagaatcaaatacttctacgcagaaactgagctattttacaattaaagcacataaat------------- 34506002  T
Q  119 acagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatatagga 218  Q
          ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| || ||  ||| |||||||||||||||||||||    
T  34506003 ------accttttgtgagattgggaagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaaatctgatatagga 34506096  T
Q  219 acagtgaagcagtcactcagataccaattttcaattataactaagtacaatacctatg 276  Q
    ||||||||||| ||| |  |||| ||| |||||| |||||  ||||||||||||||||    
T  34506097 acagtgaagcattcatttcgatatcaaatttcaaatataatcaagtacaatacctatg 34506154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 27617131 - 27617369
Alignment:
Q  19 gttatatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagtt 118  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||                 
T  27617131 gttatatcagcataataaattgggttagataagaatcaaatacttctacgcagaaactgagctattttactattaaagcacataaat------------- 27617217  T
Q  119 acagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatatagga 218  Q
          ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| || ||  ||| |||||||||||||||||||||    
T  27617218 ------accttttgtgagattgggaagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaaatctgatatagga 27617311  T
Q  219 acagtgaagcagtcactcagataccaattttcaattataactaagtacaatacctatg 276  Q
    ||||||||||| ||| |  |||| ||| |||||| |||||  ||||||||||||||||    
T  27617312 acagtgaagcattcatttcgatatcaaatttcaaatataatcaagtacaatacctatg 27617369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 34526708 - 34526846
Alignment:
Q  103 aatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcagga 202  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||| || ||  ||| |||||    
T  34526708 aatcacaagataatttacagataccttctgtgagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagctttcatcacacacagga 34526807  T
Q  203 caaatctgatataggaacagtgaagcagtcactcagata 241  Q
    ||| |||||||||||||||||| |||||||| |||||||    
T  34526808 caattctgatataggaacagtgtagcagtcattcagata 34526846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 34462932 - 34463159
Alignment:
Q  22 atatcagcataatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttaca 121  Q
    |||||| ||||||||||||  ||| |||||||| |||||||   |||| |||| | ||| || |||||||||||||||||| |||||||||||||  |||    
T  34462932 atatcaccataatgaattgatttagataagaattaaatact---atgc-gaaaatgagctatgttacaattaaagcacatacatcacaagataagcaaca 34463027  T
Q  122 gataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaaca 221  Q
    ||||||||| |   |  | ||||| ||||  ||||||   | |||||||| |||||||||||   || || |||| |||||||||||||||||| |||||    
T  34463028 gatacctttggcacggctgggaagcttgaactctgcatatttctgattgcctcctcccctaaattttcatggcacacaggacaaatctgatatatgaaca 34463127  T
Q  222 gtgaagcagtcactcagataccaattttcaat 253  Q
    |||||||||||| ||||||| ||| |||||||    
T  34463128 gtgaagcagtcattcagatatcaaatttcaat 34463159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 34474184 - 34474292
Alignment:
Q  153 tctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaa 252  Q
    ||||||||||||||||| | |||||||| ||   || || |||| ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||| |     
T  34474184 tctgcaccatcctgatttcctcctccccgaaattttcatggcacacaggataaatctgatataggagcagtgaagcagtcattcagatatcaaatttaag 34474283  T
Q  253 ttataacta 261  Q
    |||||||||    
T  34474284 ttataacta 34474292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 34512162 - 34512237
Alignment:
Q  198 caggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaatacct 273  Q
    ||||||| |||||||||||| ||| ||||||||||| ||| ||| ||| ||||||||||| |||||||| ||||||    
T  34512162 caggacatatctgatatagggacattgaagcagtcattcaaatatcaaatttcaattatatctaagtactatacct 34512237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 27626390 - 27626465
Alignment:
Q  198 caggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaatacct 273  Q
    ||||||| |||||||||||| ||| || |||||||| ||| ||| ||| ||||||||||| |||||||| ||||||    
T  27626390 caggacatatctgatatagggacattgtagcagtcattcaaatatcaaatttcaattatatctaagtactatacct 27626465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 27626235 - 27626333
Alignment:
Q  32 aatgaattgggttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagatacctttt 131  Q
    ||||||||  |||| ||||||||| |||||| |||  | ||| || ||| ||||||||||||||  |||||||||||||||||||  ||| |||||||||    
T  27626235 aatgaattaagttacataagaatccaatactcctacccggaagctgagctattttacaattaaa--acataaatcacaagataagcaacatatacctttt 27626332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 34375837 - 34375769
Alignment:
Q  42 gttatataagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaa 110  Q
    |||| |||||||||||||| | | | ||||||||| ||| |||||||||| |||| |||||||||||||    
T  34375837 gttagataagaatcaaatattccgacgcagaaactgagctattttacaatcaaagaacataaatcacaa 34375769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 34375724 - 34375681
Alignment:
Q  219 acagtgaagcagtcactcagataccaattttcaattataactaa 262  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||    
T  34375724 acagtaaagcagtcattcagataccaaatttcaattataactaa 34375681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 272
Target Start/End: Complemental strand, 15741341 - 15741143
Alignment:
Q  71 gaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattg 170  Q
    |||||||| | || |||||||| ||||||||||||||||||| | || ||| |||||||| | |||||| ||||| ||||  |||||||||||||||||     
T  15741341 gaaactaacctatgttacaatttaagcacataaatcacaagacaggtaacaaatacctttggcgagattgggaagcttgaactctgcaccatcctgatta 15741242  T
Q  171 catcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaata 270  Q
    |||||||||||||   |||||  ||| |||||||||||||  |||||||||||||| | | || ||||||| ||| |||||||||||||||||||| |||    
T  15741241 catcctcccctaaatttttatcacacacaggacaaatctg--ataggaacagtgaa-cggccagtcagatatcaaatttcaattataactaagtactata 15741145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 272
Target Start/End: Original strand, 1575035 - 1575233
Alignment:
Q  71 gaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattg 170  Q
    |||||||| | || |||||||| ||||||||||||||||||| | || ||| |||||||| | |||||| ||||| ||||  |||||||||||||||||     
T  1575035 gaaactaacctatgttacaatttaagcacataaatcacaagacaggtaacaaatacctttggcgagattgggaagcttgaactctgcaccatcctgatta 1575134  T
Q  171 catcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaata 270  Q
    |||||||||||||   |||||  ||| |||||||||||||  |||||||||||||| | | || ||||||| ||| |||||||||||||||||||| |||    
T  1575135 catcctcccctaaatttttatcacacacaggacaaatctg--ataggaacagtgaa-cggccagtcagatatcaaatttcaattataactaagtactata 1575231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 49 - 258
Target Start/End: Original strand, 10533622 - 10533829
Alignment:
Q  49 aagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagatt 148  Q
    |||||||| ||||| |||  | |||||||| | || |||||||| ||||||||||||||||||| |||| |||||||||||| | ||  || |||   ||    
T  10533622 aagaatcagatactcctacactgaaactaacctatgttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtctt 10533721  T
Q  149 gagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattt 248  Q
    ||  ||||||||||||||||| ||||||||||||||  |||||  ||| |||||||||||||  ||||||||||| || ||| || ||||||| ||| ||    
T  10533722 gaactctgcaccatcctgattacatcctcccctaagtttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatt 10533819  T
Q  249 tcaattataa 258  Q
    ||||||||||    
T  10533820 tcaattataa 10533829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 10526843 - 10527014
Alignment:
Q  85 ttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaag 184  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||| | ||  || |||   ||||  ||||||||||||||||| ||||||||| |||     
T  10526843 ttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtcttgaactctgcaccatcctgattacatcctcccttaaa 10526942  T
Q  185 cctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataa 258  Q
      |||||  ||| |||||||||||||  ||||||||||| || ||| || ||||||| ||| ||||||||||||    
T  10526943 tttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatttcaattataa 10527014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 10531311 - 10531355
Alignment:
Q  221 agtgaagcagtcactcagataccaattttcaattataactaagta 265  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||    
T  10531311 agtgaagcagtcattcagataccgaatttcaattataactaagta 10531355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 258
Target Start/End: Original strand, 807 - 1014
Alignment:
Q  49 aagaatcaaatacttctatgcagaaactaagcaattttacaattaaagcacataaatcacaagataagttacagataccttttgtgagatttggaagatt 148  Q
    |||||||| ||||| |||  | |||||||| | || |||||||| ||||||||||||||||||| |||| |||||||||||| | ||  || |||   ||    
T  807 aagaatcagatactcctacactgaaactaacctatgttacaatttaagcacataaatcacaagacaagtaacagatacctttggcgatgttgggagtctt 906  T
Q  149 gagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaggacaaatctgatataggaacagtgaagcagtcactcagataccaattt 248  Q
    ||  ||||||||||||||||| ||||||||| |||   |||||  ||| |||||||||||||  ||||||||||| || ||| || ||||||| ||| ||    
T  907 gaactctgcaccatcctgattacatcctcccttaaatttttatcacacacaggacaaatctg--ataggaacagtaaaacagccattcagatatcaaatt 1004  T
Q  249 tcaattataa 258  Q
    ||||||||||    
T  1005 tcaattataa 1014  T

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