View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_31 (Length: 279)
Name: NF19113_low_31
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 28530772 - 28530507
Alignment:
| Q |
1 |
tgattcaaatttttaaccatacattaattttgcttgacttatatttgcttatatttaagaccggagtagtaattatgtgaattaagaaacgtagtatttg |
100 |
Q |
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| T |
28530772 |
tgattcaaatttttaaccatacattaattttgcttgacttatatttgcttatatttaagaccggagtagtaattatgtgaattaagaaacgtagtatttg |
28530673 |
T |
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| Q |
101 |
attaattcccttctttattttgtaaatgctaattccttaccaggattgaaattgtcggttgcagcaacaagatcttcataactaaagtttctccaagaag |
200 |
Q |
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| T |
28530672 |
attaattcccttctttattttgtaaatgctaattccttaccaggattgaaattgtcggttgcagcaacaagatcttcataactaaagtttctccaagaag |
28530573 |
T |
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| Q |
201 |
gctttgtaataccatcaagatcaaaagcagcatcaaaaatattctcatcttcatcgttagctgttc |
266 |
Q |
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| T |
28530572 |
gctttgtaataccatcaagatcaaaagcagcatcaaaaatattctcatcttcatcgttagctgttc |
28530507 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 32332551 - 32332591
Alignment:
| Q |
34 |
ttgacttatatttgcttatatttaagaccggagtagtaatt |
74 |
Q |
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| T |
32332551 |
ttgacttatttttgtttatatttgagaccggagtagtaatt |
32332591 |
T |
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