View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_32 (Length: 272)
Name: NF19113_low_32
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 20103499 - 20103764
Alignment:
| Q |
1 |
gacttgttttcgagaagtgagtatagcaaggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcaaatgca |
100 |
Q |
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| T |
20103499 |
gacttgttttcgagaagtgagtaaagcaaggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcgaatgca |
20103598 |
T |
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| Q |
101 |
ggttgtccttcgaatgttggttttcctgtactctgattgcctccggggacgctgcctgatgtagcaaaggagacacccgcgacgagtgctgctacaactg |
200 |
Q |
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|| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| |
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| T |
20103599 |
ggctgtccttcgaatgttggttttccagtattctgattacctccggggacgctgcctgatgtagcaaaggagacgcctgcgacgagtgccgctacaactg |
20103698 |
T |
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| Q |
201 |
agcatgactgtgatgtgtctttcaaccactcaatgcttttctttagaagttctctgtgctcctcct |
266 |
Q |
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| T |
20103699 |
agcatgactgtgatgtgtctttcaaccactcaatgcttttatctagaagttctttgtgttcctcct |
20103764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 20079182 - 20079447
Alignment:
| Q |
1 |
gacttgttttcgagaagtgagtatagcaaggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcaaatgca |
100 |
Q |
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| T |
20079182 |
gacttgttttcgagaagtgagtatagaaaggaacatgattagtgcagtgaccgagaagtaaagtccaattaatgaacatatcgagaatacttcaaatgca |
20079281 |
T |
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| Q |
101 |
ggttgtccttcgaatgttggttttcctgtactctgattgcctccggggacgctgcctgatgtagcaaaggagacacccgcgacgagtgctgctacaactg |
200 |
Q |
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| T |
20079282 |
ggctgtccttcgaaatttggtttccctgattggtcattgcctccagggacactgcctgatgtagcaaaggagacgcctgcgacgagtgctgctacaactg |
20079381 |
T |
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| Q |
201 |
agcatgactgtgatgtgtctttcaaccactcaatgcttttctttagaagttctctgtgctcctcct |
266 |
Q |
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| T |
20079382 |
agcatgactctgatgtgtctttcaaccactcaatgctgctttgtagaagttctttgtgttcctcct |
20079447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 19903881 - 19903647
Alignment:
| Q |
3 |
cttgttttcgagaagtgagtatagcaaggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcaaatgcagg |
102 |
Q |
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| T |
19903881 |
cttgttttctacaagtgagtatagaaaggaataccatgagtgaagtgacagagaagtaaagtccagttaatgaacatgtagagaataaatcaaatgcagg |
19903782 |
T |
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| Q |
103 |
ttgtccttcgaatgttggttttcctgtactctgattgcctccggggacgctgcctgatgtagcaaaggagacacccgcgacgagtgctgctacaactgag |
202 |
Q |
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| T |
19903781 |
ttgtccttttaaatttggtttccctgattggtcattgcctccagggacagtgcatgatgtagcaaaggagacgcctgcgacgagtgctgccacaattgag |
19903682 |
T |
|
| Q |
203 |
catgactgtgatgtgtctttcaaccactcaatgct |
237 |
Q |
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| T |
19903681 |
cttgactctgttgtgtttttcaaccactcaatgct |
19903647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 20130719 - 20130971
Alignment:
| Q |
1 |
gacttgttttcgagaagtgagtatagcaaggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcaaatgca |
100 |
Q |
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||||||||||||| | ||||||||| |||||||| ||||||||||||| |||| ||||||| ||||||||| |||||||| | |||| |||| |||||| |
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| T |
20130719 |
gacttgttttcgatcaatgagtatagaaaggaacaagatgagtgcagtgacagaaaagtaaactccaattaatgaagatattgcgaatccttctaatgca |
20130818 |
T |
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| Q |
101 |
ggttgtccttcgaatgttggttttcctgtactctgattgcctccggggacgctgcctgatgtagcaaaggagacacccgcgacgagtgctgctacaactg |
200 |
Q |
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| ||| |||| ||| || ||| ||||| || ||||||||||||||| |||| | |||| || ||||||| || || |||| |||||||||| ||| |
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| T |
20130819 |
gtatgttcttctgatgatgatttccctgtttccttattgcctccggggacactgcttaatgttgcgaaggagatgccggcaacgattgctgctacagctg |
20130918 |
T |
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| Q |
201 |
agcatgactgtgatgtgtctttcaaccactcaatgcttttctttagaagttct |
253 |
Q |
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| T |
20130919 |
agcatgattgtgttgtttctattaaccactgagtgctattttgtagaagttct |
20130971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 23279848 - 23279784
Alignment:
| Q |
7 |
ttttcgagaagtgagtatagcaaggaacatgatgagtgcagtggcagagaagtaaagtccaatta |
71 |
Q |
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|||||||||||||||||| | |||||||| | |||||||||| ||||||| |||| ||||||| |
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| T |
23279848 |
ttttcgagaagtgagtatggacaggaacattacgagtgcagtgacagagaaacaaagaccaatta |
23279784 |
T |
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