View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19113_low_34 (Length: 255)
Name: NF19113_low_34
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2929082 - 2929320
Alignment:
| Q |
1 |
tccagtccttgcttagaagtacaaaatattttcccatgtcttgnnnnnnnaacaccgggcaaagtaggacactgattgaaaaaacttcaaggacgtccat |
100 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2929082 |
tccagtcattgcttagaagtgcaaaatattttcccatgtcttgtttttttaacaccgggcaaagtaggacactgattgaaaaaacttcaaggacgtccat |
2929181 |
T |
|
| Q |
101 |
ttagaaatttctaatcaaatataagattgtaaactctatatcaaggctgaacagttatgattgaagtatttgacttcgtacaaaattgcaaacaaataca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2929182 |
ttagaaatttctaatcaaatataagattgtaaactctatatcaaggctgaacagttacgattgaagtatttgacttcgtacaaaattgcaaacaaataca |
2929281 |
T |
|
| Q |
201 |
gctgaccacaattgagacaagttattgtgattgattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2929282 |
gctgaccacaattgagacaagttattgtgattgattcat |
2929320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University