View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19113_low_4 (Length: 651)
Name: NF19113_low_4
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 21 - 633
Target Start/End: Complemental strand, 30316003 - 30315382
Alignment:
| Q |
21 |
gaggtggcacaaaacttgttcttgattaatttattcatagtagaaa-ggtggaactctagttatagttacaagctaatgccgttttattcattgctcact |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| | ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
30316003 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttacaattacaagataatgccgttttattctttgctcact |
30315904 |
T |
|
| Q |
120 |
atgagctatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcga |
211 |
Q |
| |
|
||||||||||| | |||| ||| ||| |||||| | |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30315903 |
atgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcga |
30315804 |
T |
|
| Q |
212 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatccagggaatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30315803 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatg |
30315704 |
T |
|
| Q |
312 |
ctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaattaagaagaaccaaatattttaaataatgttaacatgtcattn |
411 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315703 |
ctacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaattaagtagaaccaaatattttaaataatgttaacatgtcatta |
30315604 |
T |
|
| Q |
412 |
nnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggtagaaaactgttgtaattaggccatacagaaggaaagagactgagtgaga |
511 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30315603 |
aaaataaaaaataactaatataggctacattcaatttaatttaattttggtagaaaactattgtaattaggccatacagaaggaaagagaccgagtgaga |
30315504 |
T |
|
| Q |
512 |
atatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatctgaagaagcagttacaacaattggat |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||||| |
|
|
| T |
30315503 |
atatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcctttacgacaattggat |
30315404 |
T |
|
| Q |
612 |
gacctgccggaattacataaac |
633 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
30315403 |
gacctgcgggaattacataaac |
30315382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 12 - 368
Target Start/End: Complemental strand, 30292494 - 30292147
Alignment:
| Q |
12 |
agcagagaggaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292494 |
agcagagaggaggtggcacaaaacttgttcttgattaatttattcatagtaggaaagtggaactctagttatagttacaagctaatgccgttttattcat |
30292395 |
T |
|
| Q |
112 |
tgctcactatgagctatagcttcttagagcgaacaagcataataagcattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcga |
211 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292394 |
tgctcactatgagct---------tagagcatacaagcataataagcattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcga |
30292304 |
T |
|
| Q |
212 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatccagggaatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30292303 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatg |
30292204 |
T |
|
| Q |
312 |
ctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30292203 |
ctagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaa |
30292147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 30305136 - 30304781
Alignment:
| Q |
21 |
gaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcacta |
120 |
Q |
| |
|
|||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |
|
|
| T |
30305136 |
gaggtggctcaaaacttattcttgattcagttattcatagtagaaaggtggaactctagttatagttacaagataatgccgttttattcatcgctcatta |
30305037 |
T |
|
| Q |
121 |
tgagctatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgac |
212 |
Q |
| |
|
| |||||||||| | || | | || |||||||| |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30305036 |
ttagctatagctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgac |
30304937 |
T |
|
| Q |
213 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatccagggaatgc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30304936 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgc |
30304837 |
T |
|
| Q |
313 |
tagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30304836 |
tagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaa |
30304781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 368
Target Start/End: Complemental strand, 30287471 - 30287113
Alignment:
| Q |
12 |
agcagagaggaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcat |
111 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
30287471 |
agcagagaggaggaggcacaaaacttattcttgattaatttattcatagtagaaaggaggaactctagtta------caagataatgccgttttattctt |
30287378 |
T |
|
| Q |
112 |
tgctcactatgagctatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctct |
203 |
Q |
| |
|
| |||| |||||||||||| | |||| ||| ||| |||||| | |||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
30287377 |
ttctcattatgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctct |
30287278 |
T |
|
| Q |
204 |
ggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatcc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30287277 |
ggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatcc |
30287178 |
T |
|
| Q |
304 |
agggaatgctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
368 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
30287177 |
agggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaa |
30287113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 30300338 - 30299989
Alignment:
| Q |
21 |
gaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcacta |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| || |||| || ||||||||||||| ||||||||| |
|
|
| T |
30300338 |
gaggtggcacaaaacttattcttgattaatttattcatggtggaaaggtggaactctagata------caagatattgccgttttattctctgctcacta |
30300245 |
T |
|
| Q |
121 |
tgagctatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgac |
212 |
Q |
| |
|
|||||||| || |||| ||| |||||||||||| |||||||| |||| |||||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
30300244 |
tgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtctctggcttcgac |
30300145 |
T |
|
| Q |
213 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatccagggaatgc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30300144 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgc |
30300045 |
T |
|
| Q |
313 |
tagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
368 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30300044 |
tacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaa |
30299989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 364 - 633
Target Start/End: Complemental strand, 30287064 - 30286801
Alignment:
| Q |
364 |
ttcaattaagaagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggta |
463 |
Q |
| |
|
|||||||||| |||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30287064 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30286965 |
T |
|
| Q |
464 |
gaaaactgttgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
563 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
30286964 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagttcctttgattgttctccgcattgatac |
30286871 |
T |
|
| Q |
564 |
caaatccaagcaaagagagatctgaagaagcagttacaacaattggatgacctgccggaattacataaac |
633 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30286870 |
caaatccaagcaaagagagatccgaagaagcagttacgacaattggatgacctgccggaattacataaac |
30286801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 364 - 633
Target Start/End: Complemental strand, 30292098 - 30291835
Alignment:
| Q |
364 |
ttcaattaagaagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggta |
463 |
Q |
| |
|
|||||||||| |||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30292098 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30291999 |
T |
|
| Q |
464 |
gaaaactgttgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
563 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
30291998 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgatac |
30291905 |
T |
|
| Q |
564 |
caaatccaagcaaagagagatctgaagaagcagttacaacaattggatgacctgccggaattacataaac |
633 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||| ||| |||||| |||||| |||||||||||||| |
|
|
| T |
30291904 |
caaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaac |
30291835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 364 - 633
Target Start/End: Complemental strand, 30304732 - 30304469
Alignment:
| Q |
364 |
ttcaattaagaagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggta |
463 |
Q |
| |
|
|||||||||| |||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30304732 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30304633 |
T |
|
| Q |
464 |
gaaaactgttgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
563 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
30304632 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgatac |
30304539 |
T |
|
| Q |
564 |
caaatccaagcaaagagagatctgaagaagcagttacaacaattggatgacctgccggaattacataaac |
633 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||| ||| |||||| |||||| |||||||||||||| |
|
|
| T |
30304538 |
caaatccaagcaaagagagatccgacgaagcttttacgacatttggataacctgctggaattacataaac |
30304469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 522 - 630
Target Start/End: Complemental strand, 30299370 - 30299262
Alignment:
| Q |
522 |
taccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatctgaagaagcagttacaacaattggatgacctgccgg |
621 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| | || ||| |||||||||||||||| |
|
|
| T |
30299370 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacctgccgg |
30299271 |
T |
|
| Q |
622 |
aattacata |
630 |
Q |
| |
|
||||||||| |
|
|
| T |
30299270 |
aattacata |
30299262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 224 - 365
Target Start/End: Complemental strand, 46810582 - 46810441
Alignment:
| Q |
224 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctgatccagggaatgctagctctttca |
323 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||| |||| ||| |||||||||||||| | |||||| | |
|
|
| T |
46810582 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
46810483 |
T |
|
| Q |
324 |
ctggtctctgaatttggcttatcacattgtcttcctcacctt |
365 |
Q |
| |
|
|||| || | ||||| |||||||||||||| |||||||||| |
|
|
| T |
46810482 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
46810441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 626
Target Start/End: Complemental strand, 46810333 - 46810227
Alignment:
| Q |
520 |
tataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatctgaagaagcagttacaacaattggatgacctgcc |
619 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||| || |||||| ||| | | ||| ||||||||| |
|
|
| T |
46810333 |
tatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagattcgaggaagcatttatggctactgggtgacctgcc |
46810234 |
T |
|
| Q |
620 |
ggaatta |
626 |
Q |
| |
|
||||||| |
|
|
| T |
46810233 |
ggaatta |
46810227 |
T |
|
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