View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_40 (Length: 243)
Name: NF19113_low_40
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_40 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 7740475 - 7740239
Alignment:
| Q |
7 |
aggtgttgaaaaggagaagcataccaaaatattaattttaaattttataaaactagaaatacatttaccgtttttcaattccgtattttctttcactnnn |
106 |
Q |
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| T |
7740475 |
aggtgttgaaaaggagaagcataccaaaatattaattttaaattttataaaactagaaatacatttaccgtttttcaatcccgtattttctttgagtcaa |
7740376 |
T |
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| Q |
107 |
nnnnttaaatatttcatatacagtatgaaagttatggagagatcgtatataaaattagattaaatagtttatacaaagtctacaaacttagcaataacgt |
206 |
Q |
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| T |
7740375 |
aaaattaaatatttcatatacagtatgaaaattatggagagatcgtatataaaattagattaaatagtttatacaaagtctacgaacttagcaacaacgt |
7740276 |
T |
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| Q |
207 |
aggtgacccaatttttcaataaaaacctcgttatttt |
243 |
Q |
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| T |
7740275 |
aggtgacccaatttttcaataaaaacctcgttatttt |
7740239 |
T |
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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 7732205 - 7732129
Alignment:
| Q |
130 |
tatgaaagttatggagagatcgtatataaaattagattaaatagtttatacaaagtctacaaacttagcaataacgt |
206 |
Q |
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| T |
7732205 |
tatgaaaattatggagagatcgtatataaaattagattagatagtttatacaaagtctatgaacttagaaacaacgt |
7732129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 7732411 - 7732344
Alignment:
| Q |
16 |
aaaggagaagcataccaaaatattaatttt-aaattttataaaactagaaatacatttaccgtttttc |
82 |
Q |
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| T |
7732411 |
aaaggaggagcataccaaaatattaattttaaaattttatcaaactaaaaatacatttaccatttttc |
7732344 |
T |
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