View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_41 (Length: 239)
Name: NF19113_low_41
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2928962 - 2928734
Alignment:
| Q |
1 |
caatctattccatggaaagatttgaattccttacaggtttctctctcacacattctcgcacacactacacacgcatgtatacaacaaacatttgtcttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928962 |
caatctattccatggaaagatttgaattccttacaggtttctctctcacacattctcgcacacactacacacgcatgtatacaacaaacatttgtcttta |
2928863 |
T |
|
| Q |
101 |
atttctggactaaggtctactgcatacggaacgtgtcactcac--attttttcacttgtatttccttatatcactttgaataaacatttgtcgaac-nnn |
197 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
2928862 |
atttctggactaaggtctactgcacacggaacgtgtcactcacatattttttcacttgtatttcctcatatcactttgaataaacatttgtggaactttt |
2928763 |
T |
|
| Q |
198 |
nnnnnggaatgaaacaattatcaaacttc |
226 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
2928762 |
tttttggaatgaaacaattatcaaacttc |
2928734 |
T |
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