View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_43 (Length: 236)
Name: NF19113_low_43
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 7740113 - 7739902
Alignment:
| Q |
8 |
aggatcatatcctcattattttaagcctacttgtttgaccaactttcactaacacagatacatactggctgctacgttttctataaatagcaaagcttaa |
107 |
Q |
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| T |
7740113 |
aggatcatatc-tcattattttaagcctacttgtttgaccaactttcactaaaacagatacatactggctgctacgttttctataaatagcaaagcttaa |
7740015 |
T |
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| Q |
108 |
aatcatacttatcacccaaatctcaaaccacctcttcatannnnnnnaacttagnnnnnnnnctccaaaattaagatgaagactactccaaacatgtttc |
207 |
Q |
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| T |
7740014 |
aatcatacttatcacccaaatctcaaaccacctcttcatatttttttaacttagaaaaaaaactccaaaattaagatgaagactactccaaacaagtttc |
7739915 |
T |
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| Q |
208 |
tcctactgcactt |
220 |
Q |
| |
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||||||| ||||| |
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| T |
7739914 |
tcctactccactt |
7739902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 7727811 - 7727686
Alignment:
| Q |
3 |
ttcaaaggatcatatcctcattattttaagcctacttgtttgaccaactttcactaacacagata--catactggctgctacgttttctataaatagcaa |
100 |
Q |
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|||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||||||| |
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| T |
7727811 |
ttcaaagggtcatatc-tcattattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaa |
7727713 |
T |
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| Q |
101 |
agcttaaaatcatacttatcacccaaa |
127 |
Q |
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| T |
7727712 |
agattaaaaccatacttatcacccaaa |
7727686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 7731980 - 7731857
Alignment:
| Q |
7 |
aaggatcatatcctcattattttaagcctacttgtttgaccaactttcactaacacag--atacatactggctgctacgttttctataaatagcaaagct |
104 |
Q |
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|||| ||||| ||| |||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||| ||||| ||||||||||||||||||| |
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| T |
7731980 |
aagggtcataaccttattattttaagcctccttgtttgaccaactttcactaaaacagatatacatcctggcgactacgaattctataaatagcaaagct |
7731881 |
T |
|
| Q |
105 |
taaaa-tcatacttatcacccaaa |
127 |
Q |
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||||| | ||||| |||||||||| |
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| T |
7731880 |
taaaattaatactaatcacccaaa |
7731857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 7699766 - 7699714
Alignment:
| Q |
170 |
ctccaaaattaagatgaagactactccaaacatgtttctcctactgcacttaa |
222 |
Q |
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| T |
7699766 |
ctccaaaattaagatgaagacttctccaaacatgtttctcctactccacttaa |
7699714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 7731791 - 7731744
Alignment:
| Q |
173 |
caaaattaagatgaagactactccaaacatgtttctcctactgcactt |
220 |
Q |
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| T |
7731791 |
caaaattaagatgaagactactccaaacatgtttctcctactccactt |
7731744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 7727634 - 7727582
Alignment:
| Q |
170 |
ctccaaaattaagatgaagactactccaaacatgtttctcctactgcacttaa |
222 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||| ||||||| |
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| T |
7727634 |
ctccaaaattaagatgaagactcctccaaacaagtttctcctactccacttaa |
7727582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 12907694 - 12907734
Alignment:
| Q |
174 |
aaaattaagatgaagactactccaaacatgtttctcctact |
214 |
Q |
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|||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
12907694 |
aaaattaagatgaagacttctcctaacatgtttcttctact |
12907734 |
T |
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