View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_5 (Length: 634)
Name: NF19113_low_5
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 47 - 619
Target Start/End: Complemental strand, 52345051 - 52344473
Alignment:
| Q |
47 |
tcagttggctggatccggccttgtaggttaagtacagtgttttgcaatcaaaatatgtgtaaaaaatttgatgaagtcaaaaaattatttgataagatat |
146 |
Q |
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| T |
52345051 |
tcagttggctggatccggccttgtaggttaagtacagtgttttgcaatcaaaatatgtgtaaaaaatttgatgaagtcaaaaaattatttgataagatat |
52344952 |
T |
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| Q |
147 |
acagctataacatttgcaattgcactttgcaagtcttcacatatat-------cctcgatccatatattacccatattacaatagtcaaatcaattttat |
239 |
Q |
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| T |
52344951 |
acagctataacatttgcaattgcactttgcaagtcttcacatatatgatatatcctcgatccatatattacccatattgcaatagtcaaatcaattttat |
52344852 |
T |
|
| Q |
240 |
tccattctttgaattttgcattgttgaccataagggtatgttgcaaattgaaggctcctatataaacctttgcatttcatgctaataatcacatccatgc |
339 |
Q |
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| T |
52344851 |
tccattctttgaattttgcattgttgaccataagggtatgttgcaaattgaaggctcctatataaacctttgcatttcatgccaataatcacatccatgc |
52344752 |
T |
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| Q |
340 |
aaatattagttacaacttattacaaacattacaattaatcccattttgcaaataatggctttaagttctgttaaaggcttcttttgtttgctattaatta |
439 |
Q |
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| T |
52344751 |
aaatattagttacaacttattacaaacattacaattaattccattttgcaa-taatggctttaagttctgttaaaggcttcttttgtttgctattaatta |
52344653 |
T |
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| Q |
440 |
catgtatgattgggatgaatacttcagctgagttatcagaaaatttctatggtaaaacttgtccaaaagctgttcgcacaattaggaaagcagtgcagga |
539 |
Q |
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| T |
52344652 |
catgtatgattgggatgaatacttcagctgagttatcagaaaatttctatggtaaaacttgtccaaaagctgttcgcacaattaggaaagcagtgcagga |
52344553 |
T |
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| Q |
540 |
tgctgtgatgaatgagagacgtatgggagcatccttgcttcgtctccatttccatgactgctttgtgcaagtaattaatt |
619 |
Q |
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| T |
52344552 |
tgctgtgatgaatgagagacgtatgggagcatccttgcttcgtctccatttccatgactgctttgtgcaagtaattaatt |
52344473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 52345123 - 52345083
Alignment:
| Q |
6 |
aggagcagagaccaataaagatgagaaattcaagcattgta |
46 |
Q |
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| T |
52345123 |
aggatcagaaaccaataaagatgagaaattcaagcattgta |
52345083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 565 - 619
Target Start/End: Complemental strand, 9156150 - 9156096
Alignment:
| Q |
565 |
ggagcatccttgcttcgtctccatttccatgactgctttgtgcaagtaattaatt |
619 |
Q |
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| T |
9156150 |
ggagcatccttgcttcgactccattttcaggactgctttgttcaagtaattaatt |
9156096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 10084392 - 10084347
Alignment:
| Q |
568 |
gcatccttgcttcgtctccatttccatgactgctttgtgcaagtaa |
613 |
Q |
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| T |
10084392 |
gcatccttgctccgtcttcatttccatgattgctttgttcaagtaa |
10084347 |
T |
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