View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_6 (Length: 584)
Name: NF19113_low_6
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 55220430 - 55220998
Alignment:
| Q |
1 |
ctcttgcaaacataacacattacccagatagaaaaaaggtctaaagaagaagggcatctacaacatcctcacggtaaggactacgtagacacaccaccag |
100 |
Q |
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| T |
55220430 |
ctcttgcaaacataacacattacccagatagaaaaaatgtctaaagaagaagggcatccaccacatcctcacggtaaggactacgtagacccaccaccag |
55220529 |
T |
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| Q |
101 |
cacccctccttgaccttgctgagattaagctctggtctttctacagagctctcatcgctgagttcatagccaccctactcttcctctatgtcactgtcgc |
200 |
Q |
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| T |
55220530 |
cacccctccttgactttgctgagattaagctctggtctttctacagagctctcatcgctgagttcatagccaccctcctcttcctctacgtcactgtcgc |
55220629 |
T |
|
| Q |
201 |
caccgtcattggtcacaaaaaacaaactgctccatgtgacggtgttggccttttaggcgtagcatggtcctttggtggcatgatttttgtccttgtctac |
300 |
Q |
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| T |
55220630 |
caccgtcattggtcacaaaaaacaaactgctccatgtgacggtgttggccttttaggcatagcatggtcctttggtggcatgatctttgtccttgtctac |
55220729 |
T |
|
| Q |
301 |
tgcactgcaggtatctccggtggccacattaaccctgcggtcacattcggccttttcttggctcgtaaagtgtctctcataagagcggtgttatacatgg |
400 |
Q |
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| T |
55220730 |
tgcactgccggtatctccggtggccacattaaccctgcggtcacattcggccttttcttggctcgtaaagtgtctctcataagagcggtgttatacatgg |
55220829 |
T |
|
| Q |
401 |
tagcacagtgtttaggtgctatctgtggcgttgggttggtgaaggctttcatgaaacacccttacaaccacctaggcggcggtgctaactctgtagcttc |
500 |
Q |
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| T |
55220830 |
tagcacagtgtttaggtgctatctgtggcgttgggttggtgaaggcattcatgaaacacccttacaaccacctaggcggcggtgctaactttgtagcttc |
55220929 |
T |
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| Q |
501 |
cggttacagcaaaggctctgccctaggtgctgaaatgatcggaacttttgtgttggtttacactgtttt |
569 |
Q |
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| T |
55220930 |
cggttacagcaaaggctctgccctaggtgctgaaatgatcggaacttttgtgttggtttacactgtttt |
55220998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 40835812 - 40835751
Alignment:
| Q |
133 |
tggtctttctacagagctctcatcgctgagttcatagccaccctactcttcctctatgtcac |
194 |
Q |
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| T |
40835812 |
tggtctttctacagagccctcatcgcagagttcgtcgccactctcctcttcctctatgtcac |
40835751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 40835658 - 40835619
Alignment:
| Q |
269 |
cctttggtggcatgatttttgtccttgtctactgcactgc |
308 |
Q |
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| T |
40835658 |
cctttggtggcatgatctttgttcttgtctactgcactgc |
40835619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 40207173 - 40207106
Alignment:
| Q |
502 |
ggttacagcaaaggctctgccctaggtgctgaaatgatcggaacttttgtgttggtttacactgtttt |
569 |
Q |
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| T |
40207173 |
ggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgtttt |
40207106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 449
Target Start/End: Original strand, 42796312 - 42796442
Alignment:
| Q |
319 |
ggtggccacattaaccctgcggtcacattcggccttttcttggctcgtaaagtgtctctcataagagcggtgttatacatggtagcacagtgtttaggtg |
418 |
Q |
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||||| ||||||||||| || || ||||| || || || ||||||||||| |||||| | || ||||| | | |||||||| || ||||||||||| | |
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| T |
42796312 |
ggtggtcacattaacccagcagtgacatttgggctatttttggctcgtaaggtgtctttgatcagagcaattatgtacatggtggctcagtgtttaggag |
42796411 |
T |
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| Q |
419 |
ctatctgtggcgttgggttggtgaaggcttt |
449 |
Q |
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| T |
42796412 |
ctattgctggagttgggttggttaaggcttt |
42796442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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