View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19113_low_7 (Length: 512)
Name: NF19113_low_7
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 154 - 502
Target Start/End: Complemental strand, 393500 - 393154
Alignment:
| Q |
154 |
gagtagctttaaccataagagctaggttttgcaacttttgccaactcctgcactggaccagttgttctgttccagatgcccaatgcattttcctcacctc |
253 |
Q |
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| T |
393500 |
gagtagctttaaccataagagctaggttttgcaacttttgccaactcctgcactggaccagttgttctgttccagatgcccaatgcattttcctcaccgc |
393401 |
T |
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| Q |
254 |
aattttcaaataattgtgttatttgaacatcaaaatgcaaatatagtctttatctctctcactttttattttctataacttgacacatatttcaaaaata |
353 |
Q |
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| T |
393400 |
aattttcaaataattatgttatttgaacatcaaaatacaaatatagtctttatctctctcactttttattttctctaacttaacacatatttcaaaaata |
393301 |
T |
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| Q |
354 |
cacaaacacctaaagacataattgtgtttgacatcaaaattttgatgtcagaaaatcatttctcattttcaaatgagaaacattggttttactttcactc |
453 |
Q |
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| T |
393300 |
cacaaacacctaaagacataattgtgtttgacatcaaaattttgatgtc--aaaatcatttctcattttcaaatgagaaacattggttttactttcactc |
393203 |
T |
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| Q |
454 |
tgtatatttatgaaatccgacatgcgaataaatacatataacagtataa |
502 |
Q |
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| T |
393202 |
tgtatatttatgaaatccgacatgcaaataaatacatataacagtataa |
393154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 393637 - 393567
Alignment:
| Q |
10 |
gtagaatgtggcgggtatttattttagtcgttgtgttcaattgtaatttggcttaatggccttcatttatc |
80 |
Q |
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| T |
393637 |
gtagaatgtggcgggtatttattttagtcgttgtgttcaattgtaatttggcttaacggccttcatttatc |
393567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 36563882 - 36563845
Alignment:
| Q |
380 |
tttgacatcaaaattttgatgtcagaaaatcatttctc |
417 |
Q |
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| T |
36563882 |
tttgacatcaaaagtttgatgtcaaaaaatcatttctc |
36563845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 257 - 442
Target Start/End: Complemental strand, 8550530 - 8550344
Alignment:
| Q |
257 |
tttcaaataattgtgttatttgaacatcaaaatgcaaatatagtctttatctctctcactttttattttctataacttgacacatatttcaaaaatacac |
356 |
Q |
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| T |
8550530 |
tttcaaataattatgttatttaaacatcaaaatacaaatatagtctttatctctctcactttttattttctctaactt-acacgtatttcaaaaatacac |
8550432 |
T |
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| Q |
357 |
--aaacacctaaagacataattgtgtttgacatcaaaattttgatgtcagaaaatcatttctcattttcaaatgagaaacattggttt |
442 |
Q |
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| T |
8550431 |
ataaacacctaaagatatcattgtgcttgacatcaaaattttgatgtcaaaaaatcatttcgcattttaaaaggagaaacatttgttt |
8550344 |
T |
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