View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19113_low_9 (Length: 500)
Name: NF19113_low_9
Description: NF19113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19113_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 6712855 - 6712407
Alignment:
| Q |
1 |
tgtaggtggtgaatattatgagcatcaaaagacatttttgtggaatgtacgtagtgaaattggttttttaatgacttggataatgctaatgaaactgtta |
100 |
Q |
| |
|
||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6712855 |
tgtagttgttgaatattattagcatcaaaagacatttttgtggaatgtacgtagtgaaattggttttttaatgacttggataatgctaatgaaactgtta |
6712756 |
T |
|
| Q |
101 |
ttgaattgaatatcggtcaagtattttttaaagggatatcattcgaagaaaaaagtagttggatgagaatctgaataccccatgagcttgatgttattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6712755 |
ttgaattgaatatcggtcaagtattttttaaagggatatcattcgaagaaaaaagtagttggatgagaatctgaataccccatgagcttgatgttattga |
6712656 |
T |
|
| Q |
201 |
ttagaacataccctttttatgttattgatgtcattttgtttttgtagtaaagcttttaaaagagggaatgagtcgattagcaaattagggttttggtgat |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6712655 |
tttgaacataccctttttatgttattgatgtcattttgtttttgtagtaaagcttttaaaagagggaatgagtcgattagcaaattagggttttggtgat |
6712556 |
T |
|
| Q |
301 |
tgggcacatattagtccaagacttaagagcatgagacaagtatgaaatatgttaacaatatgactagcatcaaaaaatgaa-nnnnnnnncttcaaagaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6712555 |
tgggcacatattagtccaagacttaagagcatgagacaggtatgaaatatgttaacaatatgactagcatcaaaaaatgaagaaaaaaaaattcaaagaa |
6712456 |
T |
|
| Q |
400 |
ttgtatttgaaacggggttcatttttaatatttgatctcttctatgaat |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6712455 |
ttgtatttgaaacggggttcatttttaatatttgatctcttctatgaat |
6712407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 484
Target Start/End: Complemental strand, 6712348 - 6712310
Alignment:
| Q |
446 |
aatgttaagactgacttttaaaacattgaaagcctaact |
484 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6712348 |
aatgttaagactgacttttaaaaaattgaaagcctaact |
6712310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 34882032 - 34881958
Alignment:
| Q |
163 |
atgagaatctgaataccccatgagcttgatgttattgattagaacat-accctttttatgttattgatgtcattt |
236 |
Q |
| |
|
||||| || |||||||||||| | |||||||||||||||||||||| | ||||||||||| ||||| |||||| |
|
|
| T |
34882032 |
atgaggatttgaataccccatcaatttgatgttattgattagaacatgtctctttttatgttgttgatttcattt |
34881958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 47261555 - 47261464
Alignment:
| Q |
276 |
attagcaaattagggttttggtgattgggcacatattagtccaagactta-agagcatgagacaagtatgaaatatgttaacaatatgacta |
366 |
Q |
| |
|
|||| ||||| |||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||| ||| || ||||||| || ||||||| |
|
|
| T |
47261555 |
attaacaaatgagggttttagtgattggtcacatgttagtgaaagacttagagagcatgagacaagcatggaacatgttaagaacatgacta |
47261464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 9718602 - 9718693
Alignment:
| Q |
276 |
attagcaaattagggttttggtgattgggcacatattagtccaagactta-agagcatgagacaagtatgaaatatgttaacaatatgacta |
366 |
Q |
| |
|
|||| ||||| |||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||| ||| || ||||||| || ||||||| |
|
|
| T |
9718602 |
attaacaaatgagggttttagtgattggtcacatgttagtgaaagacttagagagcatgagacaagcatggaacatgttaagaacatgacta |
9718693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 15928675 - 15928766
Alignment:
| Q |
276 |
attagcaaattagggttttggtgattgggcacatattagtccaagactta-agagcatgagacaagtatgaaatatgttaacaatatgacta |
366 |
Q |
| |
|
|||| ||||| |||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||| ||| || ||||||| || ||||||| |
|
|
| T |
15928675 |
attaacaaatgagggttttagtgattggtcacatgttagtgaaagacttagagagcatgagacaagcatggaacatgttaagaacatgacta |
15928766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 1803049 - 1802958
Alignment:
| Q |
276 |
attagcaaattagggttttggtgattgggcacatattagtccaagactta-agagcatgagacaagtatgaaatatgttaacaatatgacta |
366 |
Q |
| |
|
|||| ||||| |||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||| ||| || ||||||| || ||||||| |
|
|
| T |
1803049 |
attaacaaatgagggttttagtgattggtcacatgttagtgaaagacttagagagcatgagacaagcatggaacatgttaagaacatgacta |
1802958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University