View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19115_high_2 (Length: 465)
Name: NF19115_high_2
Description: NF19115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19115_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 166 - 450
Target Start/End: Complemental strand, 42147487 - 42147204
Alignment:
| Q |
166 |
ccaaatcaattataggctatacagtatagctggctacaggccatctcaatgaaatgcaagaaagatataa---actccataattgaaatgaccctcccta |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
42147487 |
ccaaatcaattataggctatacagtatagctggctacaggccagctcaatgaaatgcaagaaagatataataaactccataattgaaatgaccct----a |
42147392 |
T |
|
| Q |
263 |
ctctagagtaaatacttaataatgtgnnnnnnnnnnnnnnnntatttcaacattcattatttacatacatgtattatctaaaaatttcccttattaggaa |
362 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42147391 |
ctctagagtaaatacttaataatgtgaaaagaatcaaaaaaatatttcaacattcattatttacatacatgtattatctaaaaatgtcccttattaggaa |
42147292 |
T |
|
| Q |
363 |
aaccgaatgagataatgttgacttcaaattccaagttaattgcatttctagaatgaatttctagaagctatatattcccgataattct |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42147291 |
aaccgaatgagataatgttgacttcaaattccaagttaattgcatttctagaatgaatttctagaaactatatattcccgataattct |
42147204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 42147626 - 42147508
Alignment:
| Q |
52 |
cacaattcataatttactatatgagtaaacacaaaatatcaattatgatattattcccacttgaagttggtagttaagaatgagattgagaaacgtgatg |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42147626 |
cacaattcataatttactatatgagtaaacacaaaatatcaattatgatattattcccacttgaagttgatagttaagaatgagattgagaaacgtgatg |
42147527 |
T |
|
| Q |
152 |
ttaatcctttttaaccaaa |
170 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42147526 |
ttaatcctttttaaccaaa |
42147508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 42159632 - 42159595
Alignment:
| Q |
395 |
aagttaattgcatttctagaatgaatttctagaagcta |
432 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
42159632 |
aagttaattgcttttctaaaatgaatttctagaagcta |
42159595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University