View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19115_low_3 (Length: 440)
Name: NF19115_low_3
Description: NF19115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19115_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 42141421 - 42141000
Alignment:
| Q |
1 |
ggtgcatgcaagacaaatgaggcttttatccgttattgcctcgttgtctttgtgtttttggtggtggnnnnnnngacagcaccgtataagctagaaggga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42141421 |
ggtgcatgcaagacaaatgaggcttttatccgttattgcctcgttgtctttgtgtttttggtggtggtttttttgacagcaccgtataagctagaaggga |
42141322 |
T |
|
| Q |
101 |
aaaagaaaggacaatgcagtgaatccacattgctattgctattgctatgtttacagacttacagttaggtccagaattggaccatgctttgtacccaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42141321 |
aaaagaaaggacaatgcagtgaatccacattgctattgctattgctatgtttacagacttacagttaggtccagaattggaccatgctttgtacccaaat |
42141222 |
T |
|
| Q |
201 |
aaacccgttcggtctatttttatcctcaaaatttgtagccatactggtatcaattacattctcgtgtctatgtatgtaagtttttagagtgttgcctaac |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| | |
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| T |
42141221 |
aaacccgttcggtctatttt-atcctcaaaatttgtagccatactggtatcaattacattctcgtgtctatgtatgtaaatttttagattggtgcctatc |
42141123 |
T |
|
| Q |
301 |
tgaggtgttttggttagtaaaaaacattgttgtttggctatggagctaacgcgacaggacgaggtggccgtgaaccttatgggtcagcctagaaatgtgg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42141122 |
tgaggtgttttggttagtaaaaaacattgttgtttggctatggagttaacgcgacaggacgaggtggccgtgaaccttatgggtcagcctagaaatgtgg |
42141023 |
T |
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| Q |
401 |
cagcgtattataatgtcgattag |
423 |
Q |
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||||||||||||||||||||||| |
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| T |
42141022 |
cagcgtattataatgtcgattag |
42141000 |
T |
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