View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19116_high_14 (Length: 220)

Name: NF19116_high_14
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19116_high_14
NF19116_high_14
[»] chr5 (22 HSPs)
chr5 (103-210)||(31643389-31643499)
chr5 (1-104)||(31643884-31643987)
chr5 (1-104)||(31279489-31279592)
chr5 (1-104)||(31281417-31281520)
chr5 (1-95)||(31284701-31284795)
chr5 (1-95)||(40843336-40843430)
chr5 (1-104)||(31288470-31288573)
chr5 (1-104)||(31407417-31407520)
chr5 (1-95)||(31475954-31476048)
chr5 (134-184)||(31643460-31643510)
chr5 (23-95)||(31329930-31330002)
chr5 (1-77)||(31368556-31368632)
chr5 (23-95)||(31378712-31378784)
chr5 (1-92)||(31317342-31317433)
chr5 (1-92)||(31332183-31332274)
chr5 (27-76)||(31313256-31313305)
chr5 (1-92)||(31380968-31381059)
chr5 (27-76)||(31363009-31363058)
chr5 (40-93)||(31416561-31416614)
chr5 (40-93)||(31494138-31494191)
chr5 (10-74)||(31387834-31387898)
chr5 (40-96)||(31463031-31463087)
[»] chr3 (1 HSPs)
chr3 (1-74)||(25708421-25708494)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 31643499 - 31643389
Alignment:
Q  103 taacgaacatactaatagtctctcggatgaagatttcgtagataacgaacatactactagtctcccggatgaagattccgtaac---tattgacttccat 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  31643499 taacgaacatactactagtctctcggatgaagatttcgtagataacgaacatactactagtctcccggatgaagattccgtaactattattgacttccat 31643400  T
Q  200 tcaccttcatc 210  Q
    |||||||||||    
T  31643399 tcaccttcatc 31643389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31643987 - 31643884
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagattttcc 100  Q
    |||||||| |||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31643987 tttgtgggctttgcttcatctattgttggactactttgttatgctcttagctcttccttcaactatctatttggagattggaatctgttgaagattttcc 31643888  T
Q  101 ttta 104  Q
    ||||    
T  31643887 ttta 31643884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31279592 - 31279489
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagattttcc 100  Q
    ||||| || |||||||||  | ||||||||||  | || |||||||| |||||||||||||||||||| |||||||| ||| || | |||||||||||||    
T  31279592 tttgtaggctttgcttcagttgttgttggactggtttgttatgctctcagctcttccttcaactatctctttggagaatggaatttcttgaagattttcc 31279493  T
Q  101 ttta 104  Q
    ||||    
T  31279492 ttta 31279489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31281417 - 31281520
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagattttcc 100  Q
    ||||| || |||||||||  | || ||||||| || || |||||| | |||||||||||||| ||||| |||||||||||| || |||||||||||||||    
T  31281417 tttgtaggctttgcttcagctgttcttggacttctttgttatgctttaagctcttccttcaattatctctttggagattggaatttgttgaagattttcc 31281516  T
Q  101 ttta 104  Q
    ||||    
T  31281517 ttta 31281520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31284701 - 31284795
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagat 95  Q
    |||||||| |||||||||| |  | ||||||| || || |||||||| |||||||||||||||||||| |||||||| ||| ||||| |||||||    
T  31284701 tttgtgggctttgcttcatctgctattggactgctttgttatgctctaagctcttccttcaactatctctttggagactggaatctgctgaagat 31284795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 40843430 - 40843336
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagat 95  Q
    |||||||| |||||||||  |  |||||||||  | || |||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||    
T  40843430 tttgtgggatttgcttcagctgctgttggactggtttgttatgctctaagctcttccttcaactatctatttggaaattggaatttgttgaagat 40843336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31288470 - 31288573
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagattttcc 100  Q
    ||||| || |||||||||  | |||||||||| ||||  |||| |||  ||||||||||||| ||||| | |||||| ||| ||||||||||||||||||    
T  31288470 tttgtaggctttgcttcagctgttgttggactgctctattatggtctatgctcttccttcaattatctctctggagactggaatctgttgaagattttcc 31288569  T
Q  101 ttta 104  Q
    ||||    
T  31288570 ttta 31288573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31407520 - 31407417
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagattttcc 100  Q
    |||||||| |||||||||  |  ||||||| | ||||| |||||||| ||| ||||||||||| ||||||||||| ||||| || |||||||||| || |    
T  31407520 tttgtgggctttgcttcagctgctgttggattgctctgttatgctctcagcacttccttcaaccatctatttggaaattggaatttgttgaagatatttc 31407421  T
Q  101 ttta 104  Q
    ||||    
T  31407420 ttta 31407417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 31476048 - 31475954
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagat 95  Q
    |||||||| |||||||||  |  ||||||||| || || |||||||| ||||||||||| ||||||||||||||| | ||| || ||||||||||    
T  31476048 tttgtgggctttgcttcagctgctgttggactgctttgttatgctctaagctcttcctttaactatctatttggaaactggaatttgttgaagat 31475954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 31643510 - 31643460
Alignment:
Q  134 gatttcgtagataacgaacatactactagtctcccggatgaagattccgta 184  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  31643510 gatttcgtacataacgaacatactactagtctctcggatgaagatttcgta 31643460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 31329930 - 31330002
Alignment:
Q  23 ttgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagat 95  Q
    |||||||||| || ||| ||||||| || ||||||||||||||||| |||||||||||| || |||| |||||    
T  31329930 ttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatttgttcaagat 31330002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31368556 - 31368632
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggaga 77  Q
    |||||||| |||||||||| | ||||||||||  | ||||||||| | ||||||||||| |||||||| ||||||||    
T  31368556 tttgtgggctttgcttcatctcttgttggacttgtttgctatgctttaagctcttcctttaactatctctttggaga 31368632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 31378712 - 31378784
Alignment:
Q  23 ttgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagat 95  Q
    |||||||||| || ||| ||||||| || ||||||||||||||||| |||||||||||| || |||| |||||    
T  31378712 ttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatttgttcaagat 31378784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 31317342 - 31317433
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaa 92  Q
    |||||||| |||||||||| | ||||||||||  | ||||||||  | ||||||||||| |||||||| |||||||| ||| || |||||||    
T  31317342 tttgtgggctttgcttcatctcttgttggacttgtttgctatgcattaagctcttcctttaactatctctttggagaatggaatttgttgaa 31317433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 31332183 - 31332274
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaa 92  Q
    ||||| || |||||||||| | |||||||||| || || |||||| | ||||||||||||||||| || |||||||| ||| || |||||||    
T  31332183 tttgttggctttgcttcatctgttgttggactgctttgttatgctttaagctcttccttcaactacctctttggagaatggaatttgttgaa 31332274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 31313256 - 31313305
Alignment:
Q  27 tggactactctgctatgctcttagctcttccttcaactatctatttggag 76  Q
    |||||| |||||| ||||||| || |||||||||||||||||||||||||    
T  31313256 tggactgctctgcaatgctctaagttcttccttcaactatctatttggag 31313305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 31380968 - 31381059
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttggagattggtatctgttgaa 92  Q
    ||||| || |||||||||| | |||||||||| || || |||||| | |||||||||||||| || || |||||||| ||| || |||||||    
T  31380968 tttgttggctttgcttcatctgttgttggactgctttgttatgctttgagctcttccttcaattacctctttggagaatggaatttgttgaa 31381059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 31363009 - 31363058
Alignment:
Q  27 tggactactctgctatgctcttagctcttccttcaactatctatttggag 76  Q
    |||||| |||||| ||||||| || ||||||||||||||||| |||||||    
T  31363009 tggactgctctgcaatgctctaagttcttccttcaactatctctttggag 31363058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 31416614 - 31416561
Alignment:
Q  40 tatgctcttagctcttccttcaactatctatttggagattggtatctgttgaag 93  Q
    |||||||| |||||||| |||||| ||||||||||| ||||| || ||||||||    
T  31416614 tatgctctaagctcttctttcaaccatctatttggaaattggaatttgttgaag 31416561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 31494191 - 31494138
Alignment:
Q  40 tatgctcttagctcttccttcaactatctatttggagattggtatctgttgaag 93  Q
    |||||||| |||||||| |||||| ||||||||||| ||||| || ||||||||    
T  31494191 tatgctctaagctcttcgttcaaccatctatttggaaattggaatttgttgaag 31494138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 31387898 - 31387834
Alignment:
Q  10 tttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttgg 74  Q
    |||| ||||| | |||||||||| || || ||||||||||||||||||||||   ||||||||||    
T  31387898 tttgtttcatctgttgttggactgctttgttatgctcttagctcttccttcactcatctatttgg 31387834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 31463087 - 31463031
Alignment:
Q  40 tatgctcttagctcttccttcaactatctatttggagattggtatctgttgaagatt 96  Q
    |||||| | ||||||||||||||| ||||||||||| ||||| |  |||||||||||    
T  31463087 tatgctgtaagctcttccttcaaccatctatttggaaattggaacttgttgaagatt 31463031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 25708421 - 25708494
Alignment:
Q  1 tttgtggggtttgcttcatatattgttggactactctgctatgctcttagctcttccttcaactatctatttgg 74  Q
    ||||| || |||||||||  ||||||||||||| |||| |||||||| |||||||| || || ||||| |||||    
T  25708421 tttgttggttttgcttcagctattgttggactagtctgttatgctctcagctcttcatttaattatctgtttgg 25708494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University