View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19116_high_2 (Length: 648)
Name: NF19116_high_2
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19116_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 45283327 - 45283729
Alignment:
| Q |
19 |
cttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283327 |
cttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcacc |
45283426 |
T |
|
| Q |
119 |
attttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttc |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283427 |
attttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttc |
45283526 |
T |
|
| Q |
219 |
gggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgttgag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283527 |
gggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgagttttggcacataattctaagatttctttgttgag |
45283626 |
T |
|
| Q |
319 |
tttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataagagaaacagcggagataattacctt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283627 |
tttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataagagaaacagcggagataattacctt |
45283726 |
T |
|
| Q |
419 |
tcc |
421 |
Q |
| |
|
||| |
|
|
| T |
45283727 |
tcc |
45283729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 23 - 421
Target Start/End: Original strand, 45271557 - 45271955
Alignment:
| Q |
23 |
aatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattt |
122 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
45271557 |
aatgttgttgtcacgaacacagttgttggagaggtcaagactgtccaaagcgaattgcatcaagtctttgcagtcatcaagagccatcttggcaccattt |
45271656 |
T |
|
| Q |
123 |
tcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttcgggt |
222 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
45271657 |
ttctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggctgctgctatgtatgccttagggt |
45271756 |
T |
|
| Q |
223 |
cagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgttgagtttg |
322 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271757 |
cagcggcatcggcgccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttg |
45271856 |
T |
|
| Q |
323 |
aacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataagagaaacagcggagataattacctttcc |
421 |
Q |
| |
|
||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45271857 |
aaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagataattacctttcc |
45271955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 45275086 - 45275488
Alignment:
| Q |
19 |
cttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcacc |
118 |
Q |
| |
|
||||||||||||||||| || ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45275086 |
cttgaatgttgttgtcactaagacaattgtttgagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttggcacc |
45275185 |
T |
|
| Q |
119 |
attttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttc |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
45275186 |
attttcctttccatactcagtggtgagcctttcactcatgttaaaggcgttcatgacattgtcagtggctgccttcacggcggctgctatgtatgcctta |
45275285 |
T |
|
| Q |
219 |
gggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgttgag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275286 |
gggtcagcggcatcggcgccatgcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgag |
45275385 |
T |
|
| Q |
319 |
tttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataagagaaacagcggagataattacctt |
418 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45275386 |
tttgaacctcagggtctttaccatttttgtgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacggcggagataattacctt |
45275485 |
T |
|
| Q |
419 |
tcc |
421 |
Q |
| |
|
||| |
|
|
| T |
45275486 |
tcc |
45275488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 45294715 - 45295117
Alignment:
| Q |
19 |
cttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcacc |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45294715 |
cttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggtacc |
45294814 |
T |
|
| Q |
119 |
attttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttc |
218 |
Q |
| |
|
|| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| |
|
|
| T |
45294815 |
atcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatgtatgcctta |
45294914 |
T |
|
| Q |
219 |
gggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgttgag |
318 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
45294915 |
gggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgttgag |
45295014 |
T |
|
| Q |
319 |
tttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataagagaaacagcggagataattacctt |
418 |
Q |
| |
|
||| |||||| |||||||||||||||||| |||| ||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45295015 |
ttttaacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataagagaaacagcggagataattacctt |
45295114 |
T |
|
| Q |
419 |
tcc |
421 |
Q |
| |
|
||| |
|
|
| T |
45295115 |
tcc |
45295117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 45303675 - 45304077
Alignment:
| Q |
19 |
cttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcacc |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45303675 |
cttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggtacc |
45303774 |
T |
|
| Q |
119 |
attttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttc |
218 |
Q |
| |
|
|| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| |
|
|
| T |
45303775 |
atcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatgtatgcctta |
45303874 |
T |
|
| Q |
219 |
gggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgttgag |
318 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
45303875 |
gggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgttgag |
45303974 |
T |
|
| Q |
319 |
tttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataagagaaacagcggagataattacctt |
418 |
Q |
| |
|
||| |||||| |||||||||||||||||| |||| ||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45303975 |
ttttaacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataagagaaacagcggagataattacctt |
45304074 |
T |
|
| Q |
419 |
tcc |
421 |
Q |
| |
|
||| |
|
|
| T |
45304075 |
tcc |
45304077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 451 - 630
Target Start/End: Original strand, 45283757 - 45283937
Alignment:
| Q |
451 |
ctactcaaattattagaagactagtttcctccccttgggtgttttagtaggggaggcttattggagatccctgaagagttatgggatgatgttatggttt |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283757 |
ctactcaaattattagaagactagtttcctccccttaggtgttttagtaggggaggcttattggagatccctgaagagttatgggatgatgttatggttt |
45283856 |
T |
|
| Q |
551 |
ttataggttatcaataaaagttttaaccaaccaaagtaaattctatatctggcatg-tttttagatgataggcacataatt |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45283857 |
ttataggttatcaataaaagttttaaccaaccaaagtaaattctatatctggcatgttttttagatgataggcacataatt |
45283937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 458 - 630
Target Start/End: Original strand, 45295143 - 45295315
Alignment:
| Q |
458 |
aattattagaagactagtttcctccccttgggtgttttagtaggggaggcttattggagatccctgaagagttatgggatgatgttatggtttttatagg |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45295143 |
aattattagaagactagtttcctccccttgggtgttttagtaggggaggcttattggagatccctgaagagttatgggatgatgttatggtttttatagg |
45295242 |
T |
|
| Q |
558 |
ttatcaataaaagttttaaccaaccaaagtaaattctatatctggcatgtttttagatgataggcacataatt |
630 |
Q |
| |
|
| || || |||||||| ||||||||||||||||||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
45295243 |
tgataaaaaaaagtttctaccaaccaaagtaaattctatatttggcaatttgttaaatgataggcacataatt |
45295315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 458 - 630
Target Start/End: Original strand, 45304103 - 45304275
Alignment:
| Q |
458 |
aattattagaagactagtttcctccccttgggtgttttagtaggggaggcttattggagatccctgaagagttatgggatgatgttatggtttttatagg |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45304103 |
aattattagaagactagtttcctccccttgggtgttttagtaggggaggcttattggagatccctgaagagttatgggatgatgttatggtttttatagg |
45304202 |
T |
|
| Q |
558 |
ttatcaataaaagttttaaccaaccaaagtaaattctatatctggcatgtttttagatgataggcacataatt |
630 |
Q |
| |
|
| || || |||||||| ||||||||||||||||||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
45304203 |
tgataaaaaaaagtttctaccaaccaaagtaaattctatatttggcaatttgttaaatgataggcacataatt |
45304275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 508 - 629
Target Start/End: Original strand, 45275515 - 45275636
Alignment:
| Q |
508 |
ttattggagatccctgaagagttatgggatgatgttatggtttttataggttatcaataaaagttttaaccaaccaaagtaaattctatatctggcatgt |
607 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
45275515 |
ttattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatatttggcaatt |
45275614 |
T |
|
| Q |
608 |
ttttagatgataggcacataat |
629 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45275615 |
ttttagatgataggcacataat |
45275636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 508 - 621
Target Start/End: Original strand, 45271983 - 45272096
Alignment:
| Q |
508 |
ttattggagatccctgaagagttatgggatgatgttatggtttttataggttatcaataaaagttttaaccaaccaaagtaaattctatatctggcatgt |
607 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
45271983 |
ttattggagatccttgcagagttatgggatgatggtatggtttttataggttatcaaaaaaagtttcaaccaaccaaagtaaattctatatttggcaatt |
45272082 |
T |
|
| Q |
608 |
ttttagatgatagg |
621 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45272083 |
ttttagatgatagg |
45272096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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