View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19116_high_4 (Length: 500)

Name: NF19116_high_4
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19116_high_4
NF19116_high_4
[»] chr1 (14 HSPs)
chr1 (114-484)||(11469831-11470200)
chr1 (1-106)||(11470246-11470351)
chr1 (190-321)||(48852608-48852743)
chr1 (184-321)||(21540039-21540180)
chr1 (184-313)||(10061565-10061698)
chr1 (186-303)||(26469927-26470048)
chr1 (209-318)||(49313575-49313688)
chr1 (184-318)||(43537147-43537288)
chr1 (210-310)||(35149692-35149796)
chr1 (188-319)||(35412993-35413128)
chr1 (184-320)||(29657330-29657470)
chr1 (282-321)||(13085134-13085173)
chr1 (269-318)||(9113524-9113574)
chr1 (269-319)||(23906697-23906747)
[»] chr2 (17 HSPs)
chr2 (184-318)||(38320202-38320340)
chr2 (188-318)||(20142936-20143070)
chr2 (186-321)||(13716714-13716853)
chr2 (184-320)||(19945726-19945866)
chr2 (187-318)||(37714391-37714526)
chr2 (186-320)||(32976024-32976164)
chr2 (206-321)||(31645121-31645241)
chr2 (211-314)||(3167868-3167975)
chr2 (269-321)||(37899594-37899646)
chr2 (188-281)||(14131161-14131258)
chr2 (205-304)||(27407404-27407507)
chr2 (192-262)||(35457428-35457498)
chr2 (269-326)||(24183931-24183988)
chr2 (184-259)||(27007200-27007275)
chr2 (188-230)||(31125365-31125407)
chr2 (268-318)||(31845403-31845453)
chr2 (200-309)||(4434274-4434390)
[»] chr5 (9 HSPs)
chr5 (184-318)||(3040262-3040400)
chr5 (186-318)||(30735325-30735461)
chr5 (184-320)||(25493785-25493925)
chr5 (184-319)||(40519146-40519284)
chr5 (187-262)||(34280111-34280186)
chr5 (213-318)||(30071739-30071848)
chr5 (184-318)||(30700872-30701008)
chr5 (269-321)||(21259183-21259235)
chr5 (189-258)||(7547298-7547366)
[»] chr4 (11 HSPs)
chr4 (186-319)||(24060543-24060680)
chr4 (184-311)||(51304301-51304431)
chr4 (184-321)||(37762770-37762913)
chr4 (184-315)||(42504196-42504328)
chr4 (210-314)||(19482490-19482598)
chr4 (199-301)||(5288507-5288613)
chr4 (199-310)||(25817641-25817756)
chr4 (211-318)||(41545383-41545494)
chr4 (245-321)||(13218421-13218500)
chr4 (269-307)||(41485716-41485754)
chr4 (269-318)||(42108777-42108826)
[»] chr6 (6 HSPs)
chr6 (188-322)||(34713465-34713603)
chr6 (182-318)||(6784702-6784842)
chr6 (184-309)||(32871755-32871884)
chr6 (189-321)||(2130499-2130635)
chr6 (184-319)||(28867152-28867291)
chr6 (205-293)||(6519233-6519325)
[»] chr3 (10 HSPs)
chr3 (184-321)||(1632774-1632914)
chr3 (184-321)||(45852936-45853077)
chr3 (184-262)||(1713980-1714058)
chr3 (184-262)||(2671931-2672009)
chr3 (199-321)||(48897697-48897823)
chr3 (184-318)||(34905814-34905952)
chr3 (184-262)||(26442977-26443055)
chr3 (214-309)||(40840680-40840779)
chr3 (246-310)||(10593524-10593592)
chr3 (211-262)||(18271992-18272043)
[»] scaffold0122 (1 HSPs)
scaffold0122 (186-321)||(18599-18738)
[»] chr8 (11 HSPs)
chr8 (211-321)||(38585117-38585231)
chr8 (184-260)||(25124400-25124476)
chr8 (186-318)||(29414352-29414486)
chr8 (246-319)||(29543676-29543753)
chr8 (190-318)||(24068125-24068256)
chr8 (184-262)||(5718449-5718527)
chr8 (270-316)||(35393710-35393756)
chr8 (184-318)||(33543318-33543453)
chr8 (280-319)||(36947329-36947368)
chr8 (282-319)||(26415530-26415567)
chr8 (210-262)||(26415580-26415632)
[»] chr7 (11 HSPs)
chr7 (234-309)||(23611801-23611880)
chr7 (211-320)||(8123657-8123770)
chr7 (199-320)||(46297579-46297704)
chr7 (184-320)||(21882771-21882911)
chr7 (210-317)||(22631449-22631560)
chr7 (211-319)||(20125557-20125669)
chr7 (184-281)||(46413745-46413849)
chr7 (184-320)||(24250456-24250596)
chr7 (182-309)||(19511387-19511518)
chr7 (188-262)||(1985034-1985108)
chr7 (184-230)||(44601060-44601106)
[»] scaffold0194 (1 HSPs)
scaffold0194 (184-253)||(27111-27180)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 114 - 484
Target Start/End: Complemental strand, 11470200 - 11469831
Alignment:
Q  114 tttattccttaaatttactagcttcaattgaatctcaaaagtcaaaacttaggggcatatgttgacgacgagacagtgtatttcttaacatattttctta 213  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  11470200 tttattccttaaatttactagcttcaatagaatctcaaaagtcaaaacttaggggcatatgttgacaacgagacaatgtatttcttaacatattttctta 11470101  T
Q  214 attacacatcattatcttctttgatttccaccaaataacaaatttaa----ttaagacattttcttgataaattcttaat-aaaaactctctagataaat 308  Q
    |||||||||||||| || | ||||||||| |||||||||||||||||    |||||| |||||||||||||||||||||| |||||||||||  ||||||    
T  11470100 attacacatcattacctcccttgatttccgccaaataacaaatttaattggttaagatattttcttgataaattcttaataaaaaactctcttaataaat 11470001  T
Q  309 aacaatgctctttgataaataaacaaaaatgtaaaggagcaatcaaatatatgtaaggtgcgagagaattcttgtggacttggtacatgaataataggca 408  Q
    ||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  11470000 aacaatgat-tttgataaataaacaaaaatataaaggagcaatcaaatatatgtaaggagcgagagaatgcttgtggacttagtacatgaataataggca 11469902  T
Q  409 actaattttacataacaagcaaagttttcgaagataagaatagttacaaccaagactcacacatgtcaaacaaaac 484  Q
    |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||| ||||||||    
T  11469901 actaattttacataacaagcaaagttttcgaagataagaatag-----accaagactcacacatgtctaacaaaac 11469831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 11470351 - 11470246
Alignment:
Q  1 tcagtctctcccatgaatgaagtaccttctgagtgccaggattggaagaagtaacactagaagaatcaacagaaatgggagaattaacgctacccattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11470351 tcagtctctcccatgaatgaagtaccttctgagtgccaggattggaagaagtaacactagaagaatcaacagaaatgggagaattaacgctgcccattgt 11470252  T
Q  101 tagaac 106  Q
    ||||||    
T  11470251 tagaac 11470246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 190 - 321
Target Start/End: Complemental strand, 48852743 - 48852608
Alignment:
Q  190 tgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt----aagacattttcttgataaattct 285  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||||||   | |||||||||||||||||    || ||||||| ||||||||||||    
T  48852743 tgtatttgttaacattttttcttaattatacatcattatcttctttgattttttctaaataacaaatttaattgattaaaacatttttttgataaattct 48852644  T
Q  286 taataaaaactctctagataaataacaatgctcttt 321  Q
    ||||||||||||||||||||||||||||||||||||    
T  48852643 taataaaaactctctagataaataacaatgctcttt 48852608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 321
Target Start/End: Complemental strand, 21540180 - 21540039
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    ||||||||||||| ||||||  |||  |||||||||| ||||||||| | || |||||| |||||||||||||||||||     ||||||||||||||||    
T  21540180 agacagtgtatttgttaacacctttctttaattacacttcattatctcccttaatttccgccaaataacaaatttaattggctgagacattttcttgata 21540081  T
Q  280 aattcttaataaaaactctctagataaataacaatgctcttt 321  Q
    | ||||| |||||||||||||| ||||||| |||||||||||    
T  21540080 atttcttgataaaaactctctaaataaatagcaatgctcttt 21540039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 313
Target Start/End: Complemental strand, 10061698 - 10061565
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    ||||||| |||||  ||||| |||| |||||||||||||||||| || | ||||||||   ||||||||||||||||||     |||| |||| ||||||    
T  10061698 agacagtttatttgctaacacatttccttaattacacatcattacctcccttgatttctgtcaaataacaaatttaattggttgagacttttttttgata 10061599  T
Q  280 aattcttaataaaaactctctagataaataacaa 313  Q
    ||||||| ||||||||||||||||||||||||||    
T  10061598 aattcttgataaaaactctctagataaataacaa 10061565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 303
Target Start/End: Complemental strand, 26470048 - 26469927
Alignment:
Q  186 acagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaa 281  Q
    |||||||||||  |||||  ||| |||||||||||| |||||||||||||||||| ||  |||||| ||||||||||     ||||||||||||||||||    
T  26470048 acagtgtatttgctaacacctttccttaattacacaccattatcttctttgattttcattaaataataaatttaatttgttgagacattttcttgataaa 26469949  T
Q  282 ttcttaataaaaactctctaga 303  Q
    ||||| ||||||||||||||||    
T  26469948 ttcttgataaaaactctctaga 26469927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 49313688 - 49313575
Alignment:
Q  209 tcttaattacacatcattatcttctttgatttccaccaaataacaaatttaattaa----gacattttcttgataaattcttaataaaaactctctagat 304  Q
    ||||||||| || |||||||||||||||||||||  | ||||||||||||||||||    |||||||||||||| ||||||| ||||||||||| | |||    
T  49313688 tcttaattaaacttcattatcttctttgatttccgactaataacaaatttaattaattgagacattttcttgatcaattcttgataaaaactctatggat 49313589  T
Q  305 aaataacaatgctc 318  Q
    ||||| ||||||||    
T  49313588 aaatagcaatgctc 49313575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 318
Target Start/End: Original strand, 43537147 - 43537288
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    ||||||||||||| |||||| ||||  ||||||||||| ||||| || | |||||||||  ||||||||||||||||||     |||| ||||||||||     
T  43537147 agacagtgtatttgttaacacatttctttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgagaccttttcttgatt 43537246  T
Q  280 aattcttaataaaa---actctctagataaataacaatgctc 318  Q
    ||||||| ||||||   |||||||||||||||||||||||||    
T  43537247 aattcttgataaaaaaaactctctagataaataacaatgctc 43537288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 35149692 - 35149796
Alignment:
Q  210 cttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt----aagacattttcttgataaattcttaataaaaactctctagata 305  Q
    |||||||| |||||||||||| | |||||||    ||||||||||||||||||    |||| ||||||||||||||||||| ||||||||||||||||||    
T  35149692 cttaattatacatcattatctcccttgatttatgtcaaataacaaatttaattggttaagatattttcttgataaattcttgataaaaactctctagata 35149791  T
Q  306 aataa 310  Q
    |||||    
T  35149792 aataa 35149796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 35413128 - 35412993
Alignment:
Q  188 agtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaatt 283  Q
    ||||||||| ||||||  ||| ||||||||||||  |||| || | |||||||||  ||||||||||||||||||     |||| |||||||||||||||    
T  35413128 agtgtatttgttaacacctttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgagaccttttcttgataaatt 35413029  T
Q  284 cttaataaaaactctctagataaataacaatgctct 319  Q
     || |||||||||||||||||||||| |||| ||||    
T  35413028 attgataaaaactctctagataaatagcaattctct 35412993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 184 - 320
Target Start/End: Complemental strand, 29657470 - 29657330
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    |||||||||||||  |||||  ||| |||||||||| ||||||| || ||||||||| |  ||||||||||||||||||     |||| |||||||||      
T  29657470 agacagtgtatttgctaacacctttccttaattacatatcattacctcctttgattttcggcaaataacaaatttaattggttgagaccttttcttgacc 29657371  T
Q  280 aattcttaataaaaactctctagataaataacaatgctctt 320  Q
    |||| || |||||| |||||||||||||||  |||||||||    
T  29657370 aatttttgataaaatctctctagataaataggaatgctctt 29657330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 321
Target Start/End: Original strand, 13085134 - 13085173
Alignment:
Q  282 ttcttaataaaaactctctagataaataacaatgctcttt 321  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  13085134 ttcttgataaaaactctctagataaataacaatgctcttt 13085173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 9113524 - 9113574
Alignment:
Q  269 ttttcttgataaattcttaataaaaa-ctctctagataaataacaatgctc 318  Q
    ||||||| |||||||||| ||||||| |||| |||||||||||||||||||    
T  9113524 ttttcttaataaattcttgataaaaaactctttagataaataacaatgctc 9113574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 23906697 - 23906747
Alignment:
Q  269 ttttcttgataaattcttaataaaaactctctagataaataacaatgctct 319  Q
    |||||||||| ||||||| |||||| || |||||||||||| |||||||||    
T  23906697 ttttcttgatcaattcttgataaaacctttctagataaatagcaatgctct 23906747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 184 - 318
Target Start/End: Original strand, 38320202 - 38320340
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt-----aagacattttcttgat 278  Q
    |||||||||||||  ||||| |||| |||| ||||||||||||| || |||||||||||||||||||||||||||||||     || || ||||||||||    
T  38320202 agacagtgtatttgataacacatttccttatttacacatcattacctcctttgatttccaccaaataacaaatttaattggttgaaaac-ttttcttgat 38320300  T
Q  279 aaattcttaataaaaactctctagataaataacaatgctc 318  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  38320301 aaattcttgataaaaactctctagataaataacgatgctc 38320340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 188 - 318
Target Start/End: Complemental strand, 20143070 - 20142936
Alignment:
Q  188 agtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaatt 283  Q
    |||||||||  |||||  ||| |||||||||||||||||| |||| ||||||||| |||||||| ||||||||||     |||| |||||||||||||||    
T  20143070 agtgtattttctaacacctttccttaattacacatcattaccttccttgatttccgccaaataataaatttaattggttgagactttttcttgataaatt 20142971  T
Q  284 cttaataaaaactctctagataaataacaatgctc 318  Q
    ||| |||||||||||||||||||||||||||||||    
T  20142970 cttgataaaaactctctagataaataacaatgctc 20142936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 186 - 321
Target Start/End: Original strand, 13716714 - 13716853
Alignment:
Q  186 acagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaa 281  Q
    |||||||||||  |||||  ||||||||||||||||  |||| || ||||||||| | |||||| ||||||||||||     |||| |||||||||||||    
T  13716714 acagtgtatttgctaacaccttttcttaattacacactattacctcctttgattttcgccaaatcacaaatttaattggttgagactttttcttgataaa 13716813  T
Q  282 ttcttaataaaaactctctagataaataacaatgctcttt 321  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  13716814 ttcttgataaaaactctctagataaatagcaatgctcttt 13716853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 19945726 - 19945866
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt----aagacattttcttgata 279  Q
    ||||||||||||| |||| || ||| |||||||||||| ||||| || | || ||||||  ||||||||||||||||||     ||||||||| || |||    
T  19945726 agacagtgtatttgttaatatctttccttaattacacaccattacctcccttaatttccgtcaaataacaaatttaattgaccgagacatttttttaata 19945825  T
Q  280 aattcttaataaaaactctctagataaataacaatgctctt 320  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  19945826 aattcttaataaaaactctctaaataaatagcaatgctctt 19945866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 187 - 318
Target Start/End: Complemental strand, 37714526 - 37714391
Alignment:
Q  187 cagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaa----ttaagacattttcttgataaat 282  Q
    ||||||||||  |||||  ||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||    || | || ||||||||||||||    
T  37714526 cagtgtatttgctaacacctttccttaattacacaccattatctcctttgatttccatcaaataacaaatttaattggttgataccttttcttgataaat 37714427  T
Q  283 tcttaataaaaactctctagataaataacaatgctc 318  Q
      || |||||||||||||||||||||| ||||||||    
T  37714426 cattgataaaaactctctagataaatagcaatgctc 37714391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 320
Target Start/End: Original strand, 32976024 - 32976164
Alignment:
Q  186 acagtgtatttcttaacatattttcttaattacacatcattat--cttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    |||||||||||  |||||  |||||||||||||| | |||| |  ||||||||||||||  ||||||||||||||||||     |||||||||||||||     
T  32976024 acagtgtatttactaacaccttttcttaattacataccattttaccttctttgatttccgacaaataacaaatttaattggttgagacattttcttgatc 32976123  T
Q  280 aattcttaataaaaactctctagataaataacaatgctctt 320  Q
    ||||||| |||||| ||||||||||||||| || |||||||    
T  32976124 aattcttgataaaatctctctagataaatagcattgctctt 32976164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 31645121 - 31645241
Alignment:
Q  206 ttttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt----aagacattttctt-gataaattcttaataaaaactctct 300  Q
    ||||||||||||||||||||||  ||  ||||||||| |||||| | ||||||||||    |||||||||| || ||||||||||| |||||||||||||    
T  31645121 ttttcttaattacacatcattacgtttcttgatttccgccaaattaaaaatttaattggttaagacattttttttgataaattcttgataaaaactctct 31645220  T
Q  301 agataaataacaatgctcttt 321  Q
    ||||||||||| ||| |||||    
T  31645221 agataaataactatgttcttt 31645241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 314
Target Start/End: Complemental strand, 3167975 - 3167868
Alignment:
Q  211 ttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaactctctagataa 306  Q
    ||||||||||||||||| ||||||||||||||  ||||||| ||||||||||     |||| ||||||| | |||||||||||||||||| | || ||||    
T  3167975 ttaattacacatcattaccttctttgatttccgacaaataataaatttaattggttgagaccttttcttaacaaattcttaataaaaactttttaaataa 3167876  T
Q  307 ataacaat 314  Q
    ||| ||||    
T  3167875 atagcaat 3167868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 37899594 - 37899646
Alignment:
Q  269 ttttcttgataaattcttaataaaaactctctagataaataacaatgctcttt 321  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||||||    
T  37899594 ttttcttgataaatttttgataaaaactctctagataaatagcaatgctcttt 37899646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 14131258 - 14131161
Alignment:
Q  188 agtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt----aagacattttcttgataaa 281  Q
    |||||||||  ||||| |||| |||||||||||| ||||||||   ||||||||| |||||||||| ||||||||     ||||||||||||||||||    
T  14131258 agtgtatttgctaacacatttccttaattacacaccattatctcgcttgatttccgccaaataacagatttaattggtccagacattttcttgataaa 14131161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 27407507 - 27407404
Alignment:
Q  205 attttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaat----taagacattttcttgataaattcttaataaaaactctct 300  Q
    |||| |||||||||||| |||||||||| |||||||||   ||||||||||||||||    | | |  |||||||||| ||||||| ||||| |||||||    
T  27407507 atttccttaattacacagcattatcttccttgatttccggtaaataacaaatttaattggctgatatcttttcttgatcaattcttgataaacactctct 27407408  T
Q  301 agat 304  Q
    ||||    
T  27407407 agat 27407404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 35457498 - 35457428
Alignment:
Q  192 tatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt 262  Q
    ||||| |||||| |||| |||||||||||| ||||| || ||||||||||| | |||||| ||||||||||    
T  35457498 tatttgttaacacatttccttaattacacaccattacctcctttgatttccgctaaataataaatttaatt 35457428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 24183988 - 24183931
Alignment:
Q  269 ttttcttgataaattcttaataaaaactctctagataaataacaatgctctttgataa 326  Q
    ||||||||||||||| | ||||||||||||||| ||||| ||||||||| ||| ||||    
T  24183988 ttttcttgataaattatgaataaaaactctctaaataaacaacaatgcttttttataa 24183931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 27007275 - 27007200
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaattta 259  Q
    ||||||||||||| ||||||  ||| ||||| ||||||  |||| || | ||||||||| ||||||||||||||||    
T  27007275 agacagtgtatttgttaacacttttccttaaatacacactattacctcccttgatttccgccaaataacaaattta 27007200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 31125407 - 31125365
Alignment:
Q  188 agtgtatttcttaacatattttcttaattacacatcattatct 230  Q
    ||||||||| |||||| ||||||||||||||| ||||||||||    
T  31125407 agtgtatttattaacacattttcttaattacatatcattatct 31125365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 31845453 - 31845403
Alignment:
Q  268 attttcttgataaattcttaataaaaactctctagataaataacaatgctc 318  Q
    |||||||| || ||||||| |||||| |||||| |||||||||||||||||    
T  31845453 attttcttaatcaattcttgataaaatctctctggataaataacaatgctc 31845403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 4434390 - 4434274
Alignment:
Q  200 aacatattttcttaattacacatcattatcttct---ttgatttccaccaaataacaaatttaattaa----gacattttcttgataaattcttaataaa 292  Q
    |||| |||| |||||||||||| ||||| || ||   ||||||| |  |||||||||||||||||| |    ||| |||||||||| |||||||||||||    
T  4434390 aacacatttacttaattacacaccattacctcctcccttgattttcggcaaataacaaatttaattgactgggaccttttcttgatcaattcttaataaa 4434291  T
Q  293 aactctctagataaata 309  Q
    | ||||||  |||||||    
T  4434290 atctctctcaataaata 4434274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 184 - 318
Target Start/End: Original strand, 3040262 - 3040400
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaattaa----gacattttcttgata 279  Q
    |||||||||||||  |||||  ||| |||||||||||| ||||| || | ||||||| ||||| ||||||||||||||| |    |||||||||||||||    
T  3040262 agacagtgtatttgctaacacctttccttaattacacaccattacctcccttgattttcaccagataacaaatttaattgattgagacattttcttgata 3040361  T
Q  280 aattcttaataaaaactctctagataaataacaatgctc 318  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  3040362 aattcttgataaaaactctctaggtaaataacaatgctc 3040400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 30735325 - 30735461
Alignment:
Q  186 acagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaattaa----gacattttcttgataaa 281  Q
    |||||||||||  |||||  ||||||||||||| || ||||| || | ||||||||| ||||||||||||||||||| |    ||||||||||||||| |    
T  30735325 acagtgtatttgctaacactttttcttaattacccagcattacctcccttgatttccgccaaataacaaatttaattgattgagacattttcttgatata 30735424  T
Q  282 ttcttaataaaaactctctagataaataacaatgctc 318  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  30735425 ttcttaataaaaactatctagataaatagcaatgctc 30735461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 320
Target Start/End: Complemental strand, 25493925 - 25493785
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    ||||||| ||||| |||| | |||| |||||||||||| ||||| || ||||||||||   |||| |||||||||||||     |||||||||||||||     
T  25493925 agacagtatatttgttaatacatttccttaattacacaccattacctcctttgatttctgacaaagaacaaatttaattggctgagacattttcttgatc 25493826  T
Q  280 aattcttaataaaaactctctagataaataacaatgctctt 320  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  25493825 aattcttgataaaaactctctagataaatagcaatgctctt 25493785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 319
Target Start/End: Complemental strand, 40519284 - 40519146
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    |||||||||||||   || || |||||||||||||||||||||| || | | |||||||| ||||||||||||||||||     |||| | ||||| |||    
T  40519284 agacagtgtatttgccaatattttttcttaattacacatcattacctccct-gatttccatcaaataacaaatttaattggttgagacttattcttaata 40519186  T
Q  280 aattcttaataaaaactctctagataaataacaatgctct 319  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  40519185 aattcttgataaaaactctctagataaatagcaatgctct 40519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 34280111 - 34280186
Alignment:
Q  187 cagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt 262  Q
    |||||||||| ||||||| ||| |||||||||| | |||||||||| || |||||| |||||||||||||||||||    
T  34280111 cagtgtatttgttaacatctttccttaattacataccattatcttccttaatttccgccaaataacaaatttaatt 34280186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 318
Target Start/End: Complemental strand, 30071848 - 30071739
Alignment:
Q  213 aattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaactctctagataaat 308  Q
    ||||||||| || || ||||  ||||||||| ||||||| ||||||||||     |||| |||||||| ||||||||  ||||||||||| |||||||||    
T  30071848 aattacacaccactaccttccatgatttccaacaaataataaatttaattggttgagaccttttcttgttaaattctagataaaaactctttagataaat 30071749  T
Q  309 aacaatgctc 318  Q
    | ||||||||    
T  30071748 agcaatgctc 30071739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 318
Target Start/End: Original strand, 30700872 - 30701008
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaattta----attaagacattttcttgata 279  Q
    |||||||||||||  |||||  |||||||||||||||| ||||| || | || |||| |  |||||||||||||||    ||| |||||||||||| |||    
T  30700872 agacagtgtatttgctaacaccttttcttaattacacaacattacctcccttaattttcgtcaaataacaaatttaattgattgagacattttcttaata 30700971  T
Q  280 aattcttaataaaaactctctagataaataacaatgctc 318  Q
     ||| || |||||||  |||||||||||||  |||||||    
T  30700972 tatttttgataaaaa--ctctagataaatagaaatgctc 30701008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 21259235 - 21259183
Alignment:
Q  269 ttttcttgataaattcttaataaaaactctctagataaataacaatgctcttt 321  Q
    ||||||| || ||||||| ||||||||||||||||||||||  ||||||||||    
T  21259235 ttttctttatcaattcttgataaaaactctctagataaatataaatgctcttt 21259183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 7547366 - 7547298
Alignment:
Q  189 gtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaattt 258  Q
    ||||||||  ||||| |||| |||||||||| |||||||||| ||| |||||||  ||||||||||||||    
T  7547366 gtgtatttgctaacacatttccttaattacaaatcattatctcctt-gatttccgtcaaataacaaattt 7547298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 319
Target Start/End: Complemental strand, 24060680 - 24060543
Alignment:
Q  186 acagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaa 281  Q
    |||||||||||  ||||| |||| |||||||||||| |||||||| | |||||||| | | |||||||||||||||||    ||||||||||||||| ||    
T  24060680 acagtgtatttgctaacacatttccttaattacacaccattatctcccttgatttctaaccaataacaaatttaattagcttagacattttcttgatcaa 24060581  T
Q  282 ttcttaataaaaactctctagataaataacaatgctct 319  Q
    ||||| ||||||| ||| ||||||||||||||||||||    
T  24060580 ttcttgataaaaattctttagataaataacaatgctct 24060543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 311
Target Start/End: Original strand, 51304301 - 51304431
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaattaa----gacattttcttgata 279  Q
    ||||| |||||||  ||||||||||| |||||| |||  |||||||| |||||||||||  |||||||||||||||||| |    || |||||||| |||    
T  51304301 agacaatgtatttgctaacatatttttttaattgcacgccattatctcctttgatttccgtcaaataacaaatttaattgattgtgatattttctt-ata 51304399  T
Q  280 aattcttaataaaaactctctagataaataac 311  Q
     |||||||||||||||||||||||||||||||    
T  51304400 tattcttaataaaaactctctagataaataac 51304431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 184 - 321
Target Start/End: Complemental strand, 37762913 - 37762770
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaattaa------gacattttcttga 277  Q
    ||||| ||||||| ||||||  ||| ||||||||||||||||||| | |||||| || |  ||||||||||||||||||        | |||||||||||    
T  37762913 agacaatgtatttgttaacacttttccttaattacacatcattatttcctttgactttcgtcaaataacaaatttaattggttgtgtggcattttcttga 37762814  T
Q  278 taaattcttaataaaaactctctagataaataacaatgctcttt 321  Q
    ||||||||| || |||||||| |||||||||| |||||||||||    
T  37762813 taaattcttgatgaaaactctttagataaatagcaatgctcttt 37762770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 315
Target Start/End: Original strand, 42504196 - 42504328
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaa----ttaagacattttcttgata 279  Q
    ||||||||||||| ||||||  ||| |||||||||||||||||| || | |||||||||  ||||||||||||||||    || | |  ||||||||||     
T  42504196 agacagtgtatttgttaacacctttccttaattacacatcattacctcccttgatttccggcaaataacaaatttaattggttgaaatcttttcttgatc 42504295  T
Q  280 aattcttaataaaaactctctagataaataacaatg 315  Q
    |||||   |||||||||||||||||||||| |||||    
T  42504296 aattc---ataaaaactctctagataaatagcaatg 42504328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 19482598 - 19482490
Alignment:
Q  210 cttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaactctctagata 305  Q
    |||||||||||| |||||  | | ||||||||| |||||||||||||||||||     | | |||||||||||||||||||||  |||||||||||||||    
T  19482598 cttaattacacaccattacttcccttgatttccgccaaataacaaatttaattggttgaaaaattttcttgataaattcttaaataaaactctctagata 19482499  T
Q  306 aataacaat 314  Q
    |||| ||||    
T  19482498 aatagcaat 19482490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 5288613 - 5288507
Alignment:
Q  199 taacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaa 294  Q
    ||||| ||||| ||||||||||| |||||||| | ||||||| |  ||||||||||||||||||     |||||||||||| || ||||||||||||||     
T  5288613 taacacatttttttaattacacaccattatctcccttgatttacggcaaataacaaatttaattggctgagacattttcttaatcaattcttaataaaat 5288514  T
Q  295 ctctcta 301  Q
    |||||||    
T  5288513 ctctcta 5288507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 310
Target Start/End: Complemental strand, 25817756 - 25817641
Alignment:
Q  199 taacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaat----taagacattttcttgataaattcttaataaaaa 294  Q
    ||||| ||||||||||||||||| ||||| ||   |||||||||  |||||||||||||||||    | |||| |||||||||| ||||||| ||||||     
T  25817756 taacacattttcttaattacacaccattacctcacttgatttccgtcaaataacaaatttaattggctgagaccttttcttgatcaattcttgataaaat 25817657  T
Q  295 ctctctagataaataa 310  Q
     |||||||||| ||||    
T  25817656 gtctctagatatataa 25817641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 41545494 - 41545383
Alignment:
Q  211 ttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaactctctagataa 306  Q
    |||||||||||  |||| |||||| ||||||  |||||||||||||||||||     || | |||||||||||||||||| ||  |||||||||||||||    
T  41545494 ttaattacacacaattaccttcttcgatttctgccaaataacaaatttaattggttgaggccttttcttgataaattcttgatggaaactctctagataa 41545395  T
Q  307 ataacaatgctc 318  Q
    |||  |||||||    
T  41545394 atagtaatgctc 41545383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 13218500 - 13218421
Alignment:
Q  245 caaataacaaatttaatt----aagacattttcttgataaattcttaataaaaactctctagataaataacaatgctcttt 321  Q
    ||||||||||||||||||     |||| ||||||| ||||||| ||||||||||||||| | ||||||| |||||||||||    
T  13218500 caaataacaaatttaattgaccgagaccttttcttaataaatttttaataaaaactctc-aaataaatagcaatgctcttt 13218421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 41485754 - 41485716
Alignment:
Q  269 ttttcttgataaattcttaataaaaactctctagataaa 307  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  41485754 ttttcttgatcaattcttgataaaaactctctagataaa 41485716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 42108777 - 42108826
Alignment:
Q  269 ttttcttgataaattcttaataaaaactctctagataaataacaatgctc 318  Q
    |||||||||| ||||||| ||||||| | |||||||||||||||| ||||    
T  42108777 ttttcttgatcaattcttgataaaaaatttctagataaataacaacgctc 42108826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 188 - 322
Target Start/End: Complemental strand, 34713603 - 34713465
Alignment:
Q  188 agtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaatt 283  Q
    ||||||||| ||||||  ||||||||| |||||| |||||  | | ||||||| | ||||||||||||||||||||    ||||| ||||||||||||||    
T  34713603 agtgtatttgttaacaccttttcttaaatacacaccattacatcccttgattttcgccaaataacaaatttaattagttgagacaatttcttgataaatt 34713504  T
Q  284 cttaataaaaactctctagataaataacaatgctctttg 322  Q
    ||| |||||||||||||  ||||||| ||||||||||||    
T  34713503 cttgataaaaactctctgaataaatagcaatgctctttg 34713465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 318
Target Start/End: Original strand, 6784702 - 6784842
Alignment:
Q  182 cgagacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaat----taagacattttcttga 277  Q
    ||||| |||||||||  |||||  |||||||||||||||| |||||||| | |||||||||  |||||||||||||||||    | |||  |||| ||||    
T  6784702 cgagatagtgtatttgctaacaccttttcttaattacacaccattatctcccttgatttccgacaaataacaaatttaattggctgagatcttttattga 6784801  T
Q  278 taaattcttaataaaaactctctagataaataacaatgctc 318  Q
    |||||| || |||||||||||||||||||||| ||||||||    
T  6784802 taaattgttgataaaaactctctagataaatagcaatgctc 6784842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 309
Target Start/End: Original strand, 32871755 - 32871884
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    |||||||||||||  |||||| ||| ||||||||||||  |||| || | |||||||||  ||||||||||||||||||     | || |||||||||||    
T  32871755 agacagtgtatttactaacatttttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgaaaccttttcttgata 32871854  T
Q  280 aattcttaataaaaactctctagataaata 309  Q
    ||||||| ||||||||||||||||||||||    
T  32871855 aattcttgataaaaactctctagataaata 32871884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 189 - 321
Target Start/End: Original strand, 2130499 - 2130635
Alignment:
Q  189 gtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattc 284  Q
    ||||||||  |||||  ||| ||||||||||||  || | || ||||||||||| |||||||||||||||||||     |||  |||||||||||||||     
T  2130499 gtgtatttgctaacacctttccttaattacacacaatcacctcctttgatttccgccaaataacaaatttaattggttgagattttttcttgataaattt 2130598  T
Q  285 ttaataaaaactctctagataaataacaatgctcttt 321  Q
    || || |||||||||||||||||||||||||||||||    
T  2130599 tttattaaaactctctagataaataacaatgctcttt 2130635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 319
Target Start/End: Complemental strand, 28867291 - 28867152
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaattaag----acattttcttgata 279  Q
    ||||| |||||||  ||| | |||| |||||||||| |  |||| || |||||||||||| |||||||||||||||||| |     || ||||||| ||     
T  28867291 agacaatgtatttgctaaaacatttccttaattacatactattacctcctttgatttccaacaaataacaaatttaattgattgaaactttttcttaatc 28867192  T
Q  280 aattcttaataaaaactctctagataaataacaatgctct 319  Q
    ||||||| |||||| |||| ||||||||||||||||||||    
T  28867191 aattcttgataaaatctctttagataaataacaatgctct 28867152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 6519325 - 6519233
Alignment:
Q  205 attttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaat----taagacattttcttgataaattcttaataaaa 293  Q
    |||||||||||||||||||||||  | ||||||||| |  |||||||||||||||||    | ||||||||||||||| |||| || ||||||    
T  6519325 attttcttaattacacatcattacatcctttgattttcggcaaataacaaatttaattgactgagacattttcttgatcaatttttgataaaa 6519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 321
Target Start/End: Complemental strand, 1632914 - 1632774
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    ||||||||||||| ||||||  |||  ||||||||||| ||||| || ||||||||||| | ||||||||||||||||||    |||||||||||||||     
T  1632914 agacagtgtatttgttaacacgtttctttaattacacaccattacctcctttgatttccgcaaaataacaaatttaattagttgagacattttcttgat- 1632816  T
Q  280 aattcttaataaaaactctctagataaataacaatgctcttt 321  Q
    |||| || ||||||| |||||||||||||| ||| |||||||    
T  1632815 aatttttgataaaaattctctagataaatagcaaagctcttt 1632774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 321
Target Start/End: Original strand, 45852936 - 45853077
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    |||| ||||||||  |||||  |||||||||||||| |||||||||| | |||||| | | ||||||| ||||||||||     |||| ||||||||||     
T  45852936 agaccgtgtatttgctaacaccttttcttaattacatatcattatctcccttgattgcaagcaaataataaatttaattggttgagactttttcttgatt 45853035  T
Q  280 aattcttaataaaaactctctagataaataacaatgctcttt 321  Q
    ||||||| |||||| |||| ||||||||||||||||||||||    
T  45853036 aattcttgataaaatctctatagataaataacaatgctcttt 45853077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 1713980 - 1714058
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt 262  Q
    ||||||||||||| |||||||||||||||||||| |||  ||||||| | || |||||| |||||||||||||||||||    
T  1713980 agacagtgtatttattaacatattttcttaattatacacaattatctcccttaatttccgccaaataacaaatttaatt 1714058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 2672009 - 2671931
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt 262  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||||||| || |||||| || | ||||||||||||||||    
T  2672009 agacagtgtatttgttaacatctttccttaattacacatcattatctcctctgattttcagccaataacaaatttaatt 2671931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 199 - 321
Target Start/End: Original strand, 48897697 - 48897823
Alignment:
Q  199 taacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaa 294  Q
    |||||| |||||||||||||||| |||||| | | ||||||| |  |||||||||||||||| |     | ||||||| ||||| ||||||| ||||||     
T  48897697 taacatcttttcttaattacacaccattatttccattgattttcgacaaataacaaatttaacttgctgaaacatttttttgattaattcttgataaaat 48897796  T
Q  295 ctctctagataaataacaatgctcttt 321  Q
    ||||||||||||||| |||||||||||    
T  48897797 ctctctagataaatagcaatgctcttt 48897823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 34905952 - 34905814
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgata 279  Q
    |||||||||||||  |||||  ||| |||||||| ||||||||| || |||||||||    |||||||||||||||| |     |||||||||||| ||     
T  34905952 agacagtgtatttgctaacacctttccttaattatacatcattacctcctttgatttttgacaaataacaaatttaactggctgagacattttcttaatc 34905853  T
Q  280 aattcttaataaaaactctctagataaataacaatgctc 318  Q
    ||||||| |||||| || |||||||||||| ||||||||    
T  34905852 aattcttgataaaatctatctagataaatagcaatgctc 34905814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 26443055 - 26442977
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt 262  Q
    |||||||||||||  |||||  |||| ||||||||||| ||||| || | ||||||||| |||||||||||||||||||    
T  26443055 agacagtgtatttggtaacaccttttgttaattacacaccattacctcccttgatttccgccaaataacaaatttaatt 26442977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 40840680 - 40840779
Alignment:
Q  214 attacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaactctctagataaata 309  Q
    |||| ||||||||| || ||||||||||| |||||||| |||||||||||    | ||||||| |||||||||  || ||||||| |||||| |||||||    
T  40840680 attatacatcattacctcctttgatttccgccaaataataaatttaattagttgaaacatttttttgataaatatttgataaaaattctctaaataaata 40840779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 10593524 - 10593592
Alignment:
Q  246 aaataacaaatttaatta----agacattttcttgataaattcttaataaaaactctctagataaataa 310  Q
    |||||||||||||||||     ||||||||||| ||||||||||| |||||| ||||||| ||||||||    
T  10593524 aaataacaaatttaattggttgagacattttctggataaattcttgataaaatctctctaaataaataa 10593592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 18271992 - 18272043
Alignment:
Q  211 ttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt 262  Q
    ||||||||||| ||||| || | ||||||||| |||||||||||||||||||    
T  18271992 ttaattacacaccattacctccattgatttccgccaaataacaaatttaatt 18272043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 321
Target Start/End: Complemental strand, 18738 - 18599
Alignment:
Q  186 acagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt----aagacattttcttgataaa 281  Q
    |||||||||||  ||||| |||| ||||||||| || |||||||| | || |||| |  ||||||||||||||||||    ||||| |||||||||| ||    
T  18738 acagtgtatttgctaacacatttccttaattactcaccattatctcccttaattttcgacaaataacaaatttaattgactaagactttttcttgatcaa 18639  T
Q  282 ttcttaataaaaactctctagataaataacaatgctcttt 321  Q
    |||||||||||| |||| |||||||||| |||||||||||    
T  18638 ttcttaataaaatctctttagataaatagcaatgctcttt 18599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 211 - 321
Target Start/End: Original strand, 38585117 - 38585231
Alignment:
Q  211 ttaattacacatcattatcttctttgatttccaccaaataacaaatttaattaag----acattttcttgataaattcttaataaaaactctctagataa 306  Q
    |||||||||||  |||| || ||||||||||| |||||| ||||||||||||||     ||||||||||||||||||||| |||||||||||||| ||||    
T  38585117 ttaattacacacaattacctcctttgatttccgccaaatgacaaatttaattaattgaaacattttcttgataaattcttgataaaaactctctaaataa 38585216  T
Q  307 ataacaatgctcttt 321  Q
    ||| |||| ||||||    
T  38585217 atatcaatactcttt 38585231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 25124476 - 25124400
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaa 260  Q
    ||||||||||||| |||| |  |||||||||||||||||||||||||   ||||||||| ||||||||||| |||||    
T  25124476 agacagtgtatttgttaataccttttcttaattacacatcattatctctcttgatttccgccaaataacaactttaa 25124400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 29414486 - 29414352
Alignment:
Q  186 acagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaa 281  Q
    |||||| |||| ||||||  ||| |||||||| ||| ||||| |||| ||||||| |  ||||||||||||||||||     ||||||||||||||| ||    
T  29414486 acagtgcatttgttaacacctttccttaattaaacaccattaccttccttgattttcggcaaataacaaatttaattggctgagacattttcttgatcaa 29414387  T
Q  282 ttcttaataaaaactctctagataaataacaatgctc 318  Q
    || || |||||||  ||||||||||||| ||||||||    
T  29414386 tttttgataaaaa--ctctagataaatagcaatgctc 29414352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 29543676 - 29543753
Alignment:
Q  246 aaataacaaatttaatta----agacattttcttgataaattcttaataaaaactctctagataaataacaatgctct 319  Q
    |||||||||||||||||     ||| |||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  29543676 aaataacaaatttaattggttgagatattttcttgataaatttttgataaaaactctcttgataaataacaatgctct 29543753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 24068125 - 24068256
Alignment:
Q  190 tgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattct 285  Q
    |||||||| |||||| ||| |||||||||||| ||| | || |||||||||   | |||||||||||||||||     |||| |||||| ||| ||||||    
T  24068125 tgtatttcctaacatctttccttaattacacaccatcacctcctttgattttggc-aaataacaaatttaattggctgagactttttctcgatcaattct 24068223  T
Q  286 taataaaaactctctagataaataacaatgctc 318  Q
    | |||||| ||||||||||||||| ||||||||    
T  24068224 tgataaaatctctctagataaatagcaatgctc 24068256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 5718449 - 5718527
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt 262  Q
    |||||||||||||  ||||| |||| |||||||||||| ||||| |||| |||||||||  ||||||| ||||||||||    
T  5718449 agacagtgtatttgctaacacatttccttaattacacaccattaccttccttgatttccgacaaataataaatttaatt 5718527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 35393756 - 35393710
Alignment:
Q  270 tttcttgataaattcttaataaaaactctctagataaataacaatgc 316  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  35393756 tttcttgatcaattcttgataaaaactctctagataaatagcaatgc 35393710  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 33543453 - 33543318
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaa----ttaagacattttcttgata 279  Q
    ||||||| ||||| ||||||  |||| ||||||||||| |||||||| | ||||||||  ||||||||||||||| |    || ||||||||| || |||    
T  33543453 agacagtatatttgttaacacctttttttaattacaca-cattatctcccttgatttcagccaaataacaaattttattggttgagacatttt-tttata 33543356  T
Q  280 aattcttaataaaaactctctagataaataacaatgctc 318  Q
    |||| || ||||||| ||| || ||||||||||||||||    
T  33543355 aatttttgataaaaattctata-ataaataacaatgctc 33543318  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 36947329 - 36947368
Alignment:
Q  280 aattcttaataaaaactctctagataaataacaatgctct 319  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  36947329 aattcttgataaaatctctctagataaataacaatgctct 36947368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 26415567 - 26415530
Alignment:
Q  282 ttcttaataaaaactctctagataaataacaatgctct 319  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  26415567 ttcttgataaaaactctctagataaatagcaatgctct 26415530  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 26415632 - 26415580
Alignment:
Q  210 cttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt 262  Q
    |||||||||||||||||||||  ||| ||||||  ||||||| ||||||||||    
T  26415632 cttaattacacatcattatctcttttaatttccgtcaaataataaatttaatt 26415580  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 23611801 - 23611880
Alignment:
Q  234 ttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaactctctagataaata 309  Q
    |||||||||  ||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||    
T  23611801 ttgatttccgtcaaataacaaatttaatttgttgagacattttcttgataaattcttaataaaaactctctagataaata 23611880  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 211 - 320
Target Start/End: Complemental strand, 8123770 - 8123657
Alignment:
Q  211 ttaattacacatcattatcttctttgatttccaccaaataacaaatttaattaa----gacattttcttgataaattcttaataaaaactctctagataa 306  Q
    ||||||| |||| ||||||| | || ||||||| |||||||||||||||||| |    |||||||||||||| ||||| | |||||| ||||||||||||    
T  8123770 ttaattatacattattatctccattaatttccaacaaataacaaatttaattgactgagacattttcttgatcaattcatgataaaatctctctagataa 8123671  T
Q  307 ataacaatgctctt 320  Q
    ||| ||||||||||    
T  8123670 atagcaatgctctt 8123657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 199 - 320
Target Start/End: Complemental strand, 46297704 - 46297579
Alignment:
Q  199 taacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaa 294  Q
    ||||| |||| |||||||||||| ||||| || | ||||||| |  ||||||||||||| || |     ||||||||||||||||||||||| |||||||    
T  46297704 taacacatttccttaattacacaccattaactcccttgattttcgacaaataacaaattaaaatggctgagacattttcttgataaattcttgataaaaa 46297605  T
Q  295 ctctctagataaataacaatgctctt 320  Q
    |||||||||||||||  |||||||||    
T  46297604 ctctctagataaatagtaatgctctt 46297579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 21882771 - 21882911
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaat----taagacattttcttgata 279  Q
    |||||||||||||  |||||  ||| |||||||||||| ||||| || | |||||||||  |||||||||||||||||    | |||  ||||||| ||     
T  21882771 agacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgagatcttttcttaatc 21882870  T
Q  280 aattcttaataaaaactctctagataaataacaatgctctt 320  Q
    ||||||| |||||| ||||||||||||||| ||||||||||    
T  21882871 aattcttcataaaatctctctagataaatagcaatgctctt 21882911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 22631560 - 22631449
Alignment:
Q  210 cttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaactctctagata 305  Q
    ||||||||||||  ||||||| |||||||||||  ||||||||||||||||||     |||  |||||||||| ||||||||||||||  ||| ||||||    
T  22631560 cttaattacacactattatctcctttgatttccgacaaataacaaatttaattggctgagatcttttcttgatcaattcttaataaaatatctttagata 22631461  T
Q  306 aataacaatgct 317  Q
    ||||||||||||    
T  22631460 aataacaatgct 22631449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 20125669 - 20125557
Alignment:
Q  211 ttaattacacatcattatcttctttgatttccaccaaataacaaatttaatta----agacattttcttgataaattcttaataaaaactctctagataa 306  Q
    ||||||||||| ||||||||||||| |||||   ||| ||||||||||||||     | ||||||||||||| ||||||| |||||| ||||||||||||    
T  20125669 ttaattacacaccattatcttctttaatttctgacaagtaacaaatttaattggctgacacattttcttgatcaattcttgataaaacctctctagataa 20125570  T
Q  307 ataacaatgctct 319  Q
    |||  ||||||||    
T  20125569 atagaaatgctct 20125557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 46413745 - 46413849
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttcc---accaaataacaaatttaatta----agacattttcttg 276  Q
    ||||||||||||| ||||||  ||| |||||||||||||||||| || | |||||||||   ||||||||||||||||||||     |||||||||||||    
T  46413745 agacagtgtatttgttaacacctttccttaattacacatcattacctcccttgatttccgccaccaaataacaaatttaattggttgagacattttcttg 46413844  T
Q  277 ataaa 281  Q
    |||||    
T  46413845 ataaa 46413849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 24250456 - 24250596
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaat----taagacattttcttgata 279  Q
    |||||| ||||||  ||| || |||||||||||||| | ||||| || | |||||||||  ||||||||||||| |||    |||||  ||||||||||     
T  24250456 agacagcgtatttactaatatcttttcttaattacaaaccattacctcccttgatttccgacaaataacaaattaaattggataagatcttttcttgatc 24250555  T
Q  280 aattcttaataaaaactctctagataaataacaatgctctt 320  Q
    ||||||| |||||| |||| |||||| ||| ||||||||||    
T  24250556 aattcttgataaaatctctttagatagatagcaatgctctt 24250596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 19511518 - 19511387
Alignment:
Q  182 cgagacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaat----taagacattttcttga 277  Q
    ||||||||||||||| ||||||  ||| ||||||||| ||  ||||||| | ||||||||||  |||||| |||||||||    ||| || ||||||| |    
T  19511518 cgagacagtgtatttattaacacctttccttaattactcactattatctccattgatttccaaaaaataataaatttaattggctaaaactttttcttaa 19511419  T
Q  278 taaattcttaataaaaactctctagataaata 309  Q
    | ||||||| |||||| ||||| |||||||||    
T  19511418 tcaattcttgataaaatctctcgagataaata 19511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 1985108 - 1985034
Alignment:
Q  188 agtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataacaaatttaatt 262  Q
    |||||||||  ||||| |||| |||||||||| | ||||| |||| |||||||||  ||||||||||||||||||    
T  1985108 agtgtatttgctaacacatttccttaattacataccattaccttccttgatttccggcaaataacaaatttaatt 1985034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 44601106 - 44601060
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatct 230  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||    
T  44601106 agacagtgtatttgctaacacattttcttaattacacatcattatct 44601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 27111 - 27180
Alignment:
Q  184 agacagtgtatttcttaacatattttcttaattacacatcattatcttctttgatttccaccaaataaca 253  Q
    ||||||||||||| ||||||  ||| |||||||||||   ||||||| | ||||||||| ||||||||||    
T  27111 agacagtgtatttgttaacacctttccttaattacactctattatctcccttgatttccgccaaataaca 27180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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