View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19116_high_7 (Length: 337)
Name: NF19116_high_7
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19116_high_7 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 69 - 337
Target Start/End: Complemental strand, 19937383 - 19937115
Alignment:
| Q |
69 |
gttgctcagggtaagaagcaaatgccaacacagaggactgaatgggttcctcttaaggataacccttcaggtataggctcatctgcagccttccaacaac |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19937383 |
gttgctcagggtaagaagcaaatgccaacacagaggactgaatgggttcctcttaaggacaacccttcaggtataggctcatctgcagctttccaacaac |
19937284 |
T |
|
| Q |
169 |
ctgtttctcggccagctgctacagaggaagctattccgactcagcactcaagtccggtctttacagagctaaccaacttgcaatctcagccacaacaaca |
268 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19937283 |
ctatttctcggccagctgctacagaggaagctattccgactcagcactcaagtctgatccctacagagctaaccaacttgcaatctcagccacaacaaca |
19937184 |
T |
|
| Q |
269 |
actctctcggcctacttctgcagtagaaactctacctcttcaaaattcaagtcagcagcatgttccctc |
337 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19937183 |
gctctatcggcctacttctgcagcaaaaactctacctcttcaaaattcaagtcagcagcatgttccctc |
19937115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 19937456 - 19937419
Alignment:
| Q |
14 |
agggcatcatgtttcagtttgtcggtggattcatccac |
51 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19937456 |
agggcatcatatttcagtttgtcggtggattcatccac |
19937419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 70 - 337
Target Start/End: Original strand, 8478801 - 8479071
Alignment:
| Q |
70 |
ttgctcagggtaagaagcaaatgccaacacagaggact---gaatgggttcctcttaaggataacccttcaggtataggctcatctgcagccttccaaca |
166 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8478801 |
ttgctcaggggaagaagccaatgccaacacagaggactcatgaatgggttcctcttaaggacaacccttcaggtataggctcatctgcagccttccaaca |
8478900 |
T |
|
| Q |
167 |
acctgtttctcggccagctgctacagaggaagctattccgactcagcactcaagtccggtctttacagagctaaccaacttgcaatctcagccacaacaa |
266 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
8478901 |
acctgtttctcggccagctgctaccaaggaagctattccgactcagaactcaagtccagtccctacagagctaaccaacttgcaatctcagccacaataa |
8479000 |
T |
|
| Q |
267 |
caactctctcggcctacttctgcagtagaaactctacctcttcaaaattcaagtcagcagcatgttccctc |
337 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8479001 |
caactctctcggcctacttctgcagcagaaactctacctcttcaaaattcaaatcagcagcatgttccctc |
8479071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 8478727 - 8478764
Alignment:
| Q |
14 |
agggcatcatgtttcagtttgtcggtggattcatccac |
51 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8478727 |
agggcatcatatttcagtttgtcggtggattcatccac |
8478764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University