View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19116_low_10 (Length: 255)

Name: NF19116_low_10
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19116_low_10
NF19116_low_10
[»] chr5 (1 HSPs)
chr5 (151-242)||(35468301-35468392)
[»] chr6 (1 HSPs)
chr6 (151-234)||(27899104-27899188)
[»] chr1 (3 HSPs)
chr1 (151-234)||(11523245-11523323)
chr1 (151-207)||(41318544-41318601)
chr1 (151-207)||(47820153-47820210)
[»] chr8 (1 HSPs)
chr8 (151-199)||(18603923-18603972)
[»] chr7 (1 HSPs)
chr7 (151-199)||(42561797-42561846)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 35468301 - 35468392
Alignment:
Q  151 tgtgtttaattttaaaaagacaaaaatatccttgcatttaaatttgattgattttttctttctggtcaagtttattttgtctttagtataat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  35468301 tgtgtttaattttaaaaagacaaaaatatccttgcatttaaatttgattgattttttctttttggtcaagtttattttgtctttaatataat 35468392  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 27899104 - 27899188
Alignment:
Q  151 tgtgtttaattttaaaaagacaaaaatatccttgcatttaaatttgattga-ttttttctttctggtcaagtttattttgtcttt 234  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  27899104 tgtgtttaattttaaaaagacaaaaatatctttgcatttaattttgattgatttttttctttttggtcaagtttattttgtcttt 27899188  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 11523245 - 11523323
Alignment:
Q  151 tgtgtttaattttaaaaagacaaaaatatccttgcatttaaatttgattgattttttctttctggtcaagtttattttgtcttt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     |||||||||||||||||||    
T  11523245 tgtgtttaattttaaaaagacaaaaatatccttgcatttaaatttgattgattttttttt-----tcaagtttattttgtcttt 11523323  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 41318544 - 41318601
Alignment:
Q  151 tgtgttta-attttaaaaagacaaaaatatccttgcatttaaatttgattgatttttt 207  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41318544 tgtgtttatattttaaaaagacaaaaatatccttgcatttaaaattgattgatttttt 41318601  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 47820153 - 47820210
Alignment:
Q  151 tgtgttta-attttaaaaagacaaaaatatccttgcatttaaatttgattgatttttt 207  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47820153 tgtgtttagattttaaaaagacaaaaatatccttgcatttaaaattgattgatttttt 47820210  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 18603923 - 18603972
Alignment:
Q  151 tgtgttta-attttaaaaagacaaaaatatccttgcatttaaatttgatt 199  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  18603923 tgtgtttagattttaaaaagacaaaaatatccttgcatttaaaattgatt 18603972  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 42561846 - 42561797
Alignment:
Q  151 tgtgttta-attttaaaaagacaaaaatatccttgcatttaaatttgatt 199  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  42561846 tgtgtttagattttaaaaagacaaaaatatccttgcatttaaaattgatt 42561797  T

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