View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19116_low_12 (Length: 250)
Name: NF19116_low_12
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19116_low_12 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 27028950 - 27028790
Alignment:
| Q |
90 |
gagtttcggataaaatcagacccaaactcaatacacccaattaccaataatacccacattttaattttaattttcacaggagtgaaggagaataccaaaa |
189 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27028950 |
gagtttcgggtaaaatcagactcaaactcaataaacccaattaccaataatacccacattttaattttaattttcacaggagtgaaatagaataccaaaa |
27028851 |
T |
|
| Q |
190 |
ttgtatcatctatattgaaaattgaaacatgttagagttttaaattagaatgttgcatttt |
250 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
27028850 |
ttgtatgatctatattgaaaattgaaacatgttagagtttcaaattaggatgttgcatttt |
27028790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 27029027 - 27028979
Alignment:
| Q |
13 |
aatatctaaagaagtgggttgagctgggtcattgtgtgggtatggtttt |
61 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
27029027 |
aatatctaaaaaagtgggttgagttgggtcattgtgtgggtatagtttt |
27028979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 39783381 - 39783327
Alignment:
| Q |
192 |
gtatcatctatattgaaaattgaaacatgttagagttttaaattagaatgttgca |
246 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
39783381 |
gtatcatctatattgaaaattaaaacatgttagagttacaaattatgatgttgca |
39783327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 10789084 - 10789137
Alignment:
| Q |
193 |
tatcatctatattgaaaattgaaacatgttagagttttaaattagaatgttgca |
246 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||||| ||||||| |||||||| |
|
|
| T |
10789084 |
tatcatctatattgaaaattaaagcatgctagagttacaaattaggatgttgca |
10789137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 30806786 - 30806738
Alignment:
| Q |
202 |
tattgaaaattgaaacatgttagagttttaaattagaatgttgcatttt |
250 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
30806786 |
tattgaaaatcaaaacatgttagagttgcaaattaggatgttgcatttt |
30806738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 38036187 - 38036239
Alignment:
| Q |
194 |
atcatctatattgaaaattgaaacatgttagagttttaaattagaatgttgca |
246 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |||||| |||||||| |
|
|
| T |
38036187 |
atcatctatattgaaaattaaaacatgttatagttaaaaattacgatgttgca |
38036239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 14609634 - 14609587
Alignment:
| Q |
199 |
ctatattgaaaattgaaacatgttagagttttaaattagaatgttgca |
246 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
14609634 |
ctatattgaaaatcaaaacatgttagagtttcaaattaggatgttgca |
14609587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 19280730 - 19280780
Alignment:
| Q |
193 |
tatcatctatattgaaaattgaaacatgttagagttttaaattagaatgtt |
243 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
19280730 |
tatcgtctatattgaaaattaaaacaagttagagttacaaattagaatgtt |
19280780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 28402 - 28454
Alignment:
| Q |
194 |
atcatctatattgaaaattgaaacatgttagagttttaaattagaatgttgca |
246 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| ||||||| |||||||| |
|
|
| T |
28402 |
atcatctatattgaaaatcaaaacatgttatagttataaattatgatgttgca |
28454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 19205916 - 19205968
Alignment:
| Q |
198 |
tctatattgaaaattgaaacatgttagagttttaaattagaatgttgcatttt |
250 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
19205916 |
tctatattgaaaatcaaaacatgctagagttgcaaattaggatgttgcatttt |
19205968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University