View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19116_low_13 (Length: 249)
Name: NF19116_low_13
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19116_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 5230408 - 5230176
Alignment:
| Q |
1 |
gccatttgagcagcccattttgtgtaagcctttccaggagcaccaatttcccattccacaggtccatactcattctcaatctatggattcaaatggatac |
100 |
Q |
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| T |
5230408 |
gccatttgagcagcccattttgtgtaagcctttccaggagcaccaatttcccattccacaggtccatactcattctcaatctatggattcaaatggatac |
5230309 |
T |
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| Q |
101 |
ccattttcattattagattaaattaagcataacttattattgtaattggctgcaacctaaactatataatnnnnnnntgttacccaaaataagacaacat |
200 |
Q |
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| T |
5230308 |
ccattttcattattagattaaattaggcataacttattattgtaattggctgcaacataaactatataataaaaaaatgttacccaaaataagacaacat |
5230209 |
T |
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| Q |
201 |
atttaaatataatttctttatttacctgagaca |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
5230208 |
atttaaatataatttctttatttacctgagaca |
5230176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17125474 - 17125393
Alignment:
| Q |
1 |
gccatttgagcagcccattttgtgtaagcctttccaggagcaccaatttcccattccacaggtccatactcattctcaatct |
82 |
Q |
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|||||||||| | |||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17125474 |
gccatttgagaaaaccatttggtgtaagattttccaggtgcaccaatttcccattccactggtccatactcattctcaatct |
17125393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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