View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19116_low_14 (Length: 241)
Name: NF19116_low_14
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19116_low_14 |
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| [»] scaffold0106 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 8479311 - 8479091
Alignment:
| Q |
19 |
ggaataacatcattaacattttcaacatttacctcggtaatttctttttgttgaactggtgctgcttgcatcaaactaatatttccctcatttgtacttt |
118 |
Q |
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| T |
8479311 |
ggaataacatcattaacattttcaacatttacctccgtaatttctttttgctgaactggtgctgcttgaatcaaactaatatttccctcatttgtactgt |
8479212 |
T |
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| Q |
119 |
gttcttcagcctcattgtgttgtaaggtggcctccaaagctacaaattcctcagtggaattgatatcctgatgtgtctctgcctgttcactcgtgggctg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
8479211 |
gttcttcagcctcattgtgttgtaaggtggcctccaaagctacaaattcgtgagtggaattgatatcctgatgtgtcccttcctgttcactcgtgggctg |
8479112 |
T |
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| Q |
219 |
ctgttgggaagtgttgaaagt |
239 |
Q |
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||||||||||||||||||||| |
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| T |
8479111 |
ctgttgggaagtgttgaaagt |
8479091 |
T |
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Back To:
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Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 19936889 - 19937060
Alignment:
| Q |
19 |
ggaataacatcattaacattttcaacatttacctcggtaatttctttttgttgaactggtgctgcttgcatcaaactaatatttccctcatttgtacttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19936889 |
ggaataacatcattaacattttcaacatttacctccgtaatttctttttgctgaactggtgctgcttgcatcaaactaatatttccctcatttgtacttt |
19936988 |
T |
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| Q |
119 |
gttcttcagcctcattgtgttgtaaggtggcctccaaagctacaaattcctcagtggaattgatatcctgat |
190 |
Q |
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| T |
19936989 |
gttcttcagcctcattgggttgtaaagtggcctccaaagctacaaattcctcagtggaattgatatcctgat |
19937060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 19937060 - 19937095
Alignment:
| Q |
204 |
ttcactcgtgggctgctgttgggaagtgttgaaagt |
239 |
Q |
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| T |
19937060 |
ttcactcgtgggctgctgttgggaagtcttgaaagt |
19937095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0106 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0106
Description:
Target: scaffold0106; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 22581 - 22515
Alignment:
| Q |
161 |
caaattcctcagtggaattgatatcctgatgtgtctctgcctgttcactcgtgggctgctgttggga |
227 |
Q |
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||||||| |||||||||| ||| |||||| |||||||| |||| |||| ||||||||||||||||| |
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| T |
22581 |
caaattcttcagtggaatggatgtcctgaagtgtctcttcctgctcacgagtgggctgctgttggga |
22515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 41067683 - 41067649
Alignment:
| Q |
19 |
ggaataacatcattaacattttcaacatttacctc |
53 |
Q |
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| T |
41067683 |
ggaataacatcattaacattttcaacatttacctc |
41067649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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