View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19116_low_3 (Length: 561)
Name: NF19116_low_3
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19116_low_3 |
 | |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 9 - 546
Target Start/End: Complemental strand, 895711 - 895178
Alignment:
| Q |
9 |
caagaatataagcaacactcacttgttacaaaaccatttacattacaacaaatcaaataaacacatctcacaaattatctttctttttctataatcactt |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| || | || |||| || ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
895711 |
caagaaaataagcaacactcacttgttacaaaacaatcttca--acaaattattaaata--cacatctcacaaattatctttctttttctataatcactt |
895616 |
T |
|
| Q |
109 |
atctcaacttttatgcacattatgaacaaaaaatcatgcattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaac |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
895615 |
atctcaacttttatgcacattatgaacaaaaaaccatgcattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaac |
895516 |
T |
|
| Q |
209 |
aattacttcaacatcacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaacaattttccacc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
895515 |
aattacttcaacatcacaatgaattcattgtcacattcatcattccaacactttctcctcttactccttcaatgcaacaagtcttgaacaatcttccacc |
895416 |
T |
|
| Q |
309 |
aaacatagacttcattcttcttcctcaagtaaaaaatattcaacaaagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccattt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
895415 |
aaacatagacttcattcttcttcctcaagtaaaaaatattcaacaaagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccattt |
895316 |
T |
|
| Q |
409 |
cttcaacaagaagttaaatcactcatttccaaaacttaccttgtttctttaatcttcagtatattttcaacagatgcatatgaagttgctaaacaattca |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
895315 |
cttcaacaagaagttaaatcactcatttccaaaactaaccttgtttctttaatcttcagtatattttcaacagatgcatatgaagttgccaaacaattta |
895216 |
T |
|
| Q |
509 |
acttgtcttcttaccttttctatgcctcgggagctgtt |
546 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
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|
| T |
895215 |
acttgtcttcttaccttttctatgcctcaggagctgtt |
895178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 95 - 539
Target Start/End: Original strand, 905011 - 905458
Alignment:
| Q |
95 |
ttctataatcacttatctcaacttttatgcacattatgaacaaaaaatcatgcattgctatggttccttcccctggactaagccatttaattccacaagt |
194 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| ||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
905011 |
ttctataatcacttatctcaacttctatacacatcatgaataaaaaaacatacattgctatggttccttcccctggacttagccatttaattccacaagt |
905110 |
T |
|
| Q |
195 |
tgaatttgccaaacaattacttcaacatcacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttg |
294 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905111 |
tgaatttgccaaacaattacttcaacaacacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttg |
905210 |
T |
|
| Q |
295 |
aacaattttccaccaaacatagacttcattcttcttcctcaagtaaaaaatattcaaca---aagccatgatcctgcagcacaaatgaaactcattgtga |
391 |
Q |
| |
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|||| | |||| ||||||||||| |||||| ||||||||||||||||| | ||| | | | | ||| |||||| ||||||||||||||||||||| |
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|
| T |
905211 |
aacactcttcccccaaacatagaattcattgttcttcctcaagtaaaacaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtga |
905310 |
T |
|
| Q |
392 |
aacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttctttaatcttcagtatattttcaacagatgcatatga |
491 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| || |||| ||||| |||||| |||| |
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| T |
905311 |
aacattctattccatttctacaagaagaagtaaaatcactcatttccaaaactaaccttgtttctttaatctttggtctattctcaaccgatgcacatga |
905410 |
T |
|
| Q |
492 |
agttgctaaacaattcaacttgtcttcttaccttttctatgcctcggg |
539 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
905411 |
agttgctaaacaattcaatttatcttcttaccttttctatgcctcggg |
905458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 143 - 546
Target Start/End: Complemental strand, 8295530 - 8295121
Alignment:
| Q |
143 |
catgcattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcac |
242 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||| ||||||| |||||| ||||| |||| |||||| ||| |||||||||||| | | |||| |
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| T |
8295530 |
catgcattgctatggttccttcacctggattgagccatttgattccactagttgagtttgctaaactattactccaaaatcacaatgaataccatatcac |
8295431 |
T |
|
| Q |
243 |
attcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaacaattttccaccaaacatagacttcattcttcttcctcaagtaa-- |
340 |
Q |
| |
|
|||| ||||||| |||||| |||| || |||||||| |||||| ||||||||| | ||||||||||||| |||||||| ||||||| ||||| | |
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|
| T |
8295430 |
attcctcattcccacacttggtccactaactccttccatgcaatccatcttgaacactcttccaccaaacatgaacttcattgttcttccccaagtcaac |
8295331 |
T |
|
| Q |
341 |
----aaaatattcaacaaagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcattt |
436 |
Q |
| |
|
|| | ||| ||| | | |||||||||| |||| ||||||||||| |||||||| ||||||||||||||| | ||||||| ||||||||| ||| |
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|
| T |
8295330 |
attgaagaccttccacataatcttgatcctgcaacacagatgaaactcatagtgaaacactctattccatttctttatgaagaagtaaaatcactccttt |
8295231 |
T |
|
| Q |
437 |
ccaaaacttaccttgtttctttaatcttcagtatattttcaacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctc |
536 |
Q |
| |
|
| |||||| ||| ||| ||||| | ||||| || |||||||| |||||| |||| ||||| ||||| |||||| | | || |||||||||| | |||| |
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|
| T |
8295230 |
caaaaactcgcctagttgctttagttttcagcatgttttcaaccgatgcacatgatgttgcgaaacatttcaaccttttatcataccttttcttttcctc |
8295131 |
T |
|
| Q |
537 |
gggagctgtt |
546 |
Q |
| |
|
||||||||| |
|
|
| T |
8295130 |
aggagctgtt |
8295121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 143 - 546
Target Start/End: Original strand, 33256225 - 33256634
Alignment:
| Q |
143 |
catgcattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcac |
242 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| |||| |||||| |||||||||||||| | | | |||| |
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|
| T |
33256225 |
catgcattgctatggttccttcacctggattgagccatttgattccacaagttgagtttgcaaaactattactccaacatcacaatgagtaccatatcac |
33256324 |
T |
|
| Q |
243 |
attcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaacaattttccaccaaacatagacttcattcttcttcctcaagtaa-- |
340 |
Q |
| |
|
|||| ||||||| |||||| |||| || |||||||| |||||| | ||||||||| ||||||||||||| |||||| | ||||||| ||||| | |
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|
| T |
33256325 |
attcctcattcccacacttggtccactaactccttccatgcaatcaatcttgaacacacttccaccaaacatgaacttcactgttcttccccaagtcaac |
33256424 |
T |
|
| Q |
341 |
----aaaatattcaacaaagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcattt |
436 |
Q |
| |
|
|| | ||| ||| | | ||| ||| || |||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||| ||| |
|
|
| T |
33256425 |
attgaagaccttccacataatcttgaaccttcaacacaaatgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttcttt |
33256524 |
T |
|
| Q |
437 |
ccaaaacttaccttgtttctttaatcttcagtatattttcaacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctc |
536 |
Q |
| |
|
| |||||| |||||||| ||||| | | ||| || |||||||| |||||| | || || |||||||| |||||| | | ||||||||||||| | | || |
|
|
| T |
33256525 |
caaaaactaaccttgttgctttagtttgcagcatgttttcaaccgatgcacacgatgtagctaaacatttcaaccttttgtcttaccttttcttttcttc |
33256624 |
T |
|
| Q |
537 |
gggagctgtt |
546 |
Q |
| |
|
||||||||| |
|
|
| T |
33256625 |
aggagctgtt |
33256634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 6440492 - 6440567
Alignment:
| Q |
223 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
298 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||| || ||| ||| |||||||||||| | ||||| ||||||| |
|
|
| T |
6440492 |
cacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatgtagcaagtattgaaca |
6440567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 143 - 546
Target Start/End: Original strand, 343 - 752
Alignment:
| Q |
143 |
catgcattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcac |
242 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| |||| |||||| |||||||||||||| | | | |||| |
|
|
| T |
343 |
catgcattgctatggttccttcacctggattgagccatttgattccacaagttgagtttgcaaaactattactccaacatcacaatgagtaccatatcac |
442 |
T |
|
| Q |
243 |
attcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaacaattttccaccaaacatagacttcattcttcttcctcaagtaa-- |
340 |
Q |
| |
|
|||| ||||||| |||||| |||| || |||||||| |||||| | ||||||||| ||||||||||||| |||||| | ||||||| ||||| | |
|
|
| T |
443 |
attcctcattcccacacttggtccactaactccttccatgcaatcaatcttgaacacacttccaccaaacatgaacttcactgttcttccccaagtcaac |
542 |
T |
|
| Q |
341 |
----aaaatattcaacaaagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcattt |
436 |
Q |
| |
|
|| | ||| ||| | | ||| ||| || |||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||| ||| |
|
|
| T |
543 |
attgaagaccttccacataatcttgaaccttcaacacaaatgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttcttt |
642 |
T |
|
| Q |
437 |
ccaaaacttaccttgtttctttaatcttcagtatattttcaacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctc |
536 |
Q |
| |
|
| |||||| |||||||| ||||| | | ||| || |||||||| |||||| | || || |||||||| |||||| | | ||||||||||||| | | || |
|
|
| T |
643 |
caaaaactaaccttgttgctttagtttgcagcatgttttcaaccgatgcacacgatgtagctaaacatttcaaccttttgtcttaccttttcttttcttc |
742 |
T |
|
| Q |
537 |
gggagctgtt |
546 |
Q |
| |
|
||||||||| |
|
|
| T |
743 |
aggagctgtt |
752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 34765317 - 34765242
Alignment:
| Q |
223 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
298 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||||||| |||||| |||| ||||||||| ||| |||||||| |
|
|
| T |
34765317 |
cacaatgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatgcatcaaaccttgaaca |
34765242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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