View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19116_low_5 (Length: 431)
Name: NF19116_low_5
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19116_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 31427240 - 31426820
Alignment:
| Q |
1 |
cttgattctctgaagtctcatagcaagcagaatactcccttcaagcctatttccatttccatcactcctaagcagaggaaacgacccaactttacgtcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31427240 |
cttgattctctgaagtctcatagcaagcagaatactcccttcaagcctatttccatttccatcactcctaagcagaggaaacgacccaactttacgtcga |
31427141 |
T |
|
| Q |
101 |
taaaactccatcggaacaggaatcttcaccctccctatcacaactttaccactagaagttccaggatcaagcaaagaatcaaacctctgtacctcaacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31427140 |
taaaactccatcggaacaggaatcttcaccctccctatcacaactttaccactagaagttccaggatcaagcaaagaatcaaacctctgtacctcaacat |
31427041 |
T |
|
| Q |
201 |
tcagaaaaacttcatcatcaagattctctaacacgaccatatcatcttgattccattcagggttaacacctacagcaatcttggtggaagcttcttcatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31427040 |
tcagaaaaacttcatcatcaagattctctaacacgaccatatcatcttgattccattcagggttaacacctacagcaatcttggtggaagcttcttcatc |
31426941 |
T |
|
| Q |
301 |
aggctttaaccaatacaccacattgtaagctctgttgttaacacttgggtaatttgcggggttgtcgattccttcagccttgtaaatcatcacatgcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31426940 |
aggctttaaccaatacaccacattgtaagctctgttgttaacacttgggtaatttgcggggttgtcgattccttcagccttgtaaatcatcacatgcaaa |
31426841 |
T |
|
| Q |
401 |
gcaactttgaattcttctgtg |
421 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
31426840 |
gcaactttgaattcttctgtg |
31426820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 7172201 - 7171781
Alignment:
| Q |
1 |
cttgattctctgaagtctcatagcaagcagaatactcccttcaagcctatttccatttccatcactcctaagcagaggaaacgacccaactttacgtcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
7172201 |
cttgattctctgaagtctcatagcaagcagaatactcccttcaagcctctttccatttccatcactcctaagcagaggaaacgacccaacttttcgtcga |
7172102 |
T |
|
| Q |
101 |
taaaactccatcggaacaggaatcttcaccctccctatcacaactttaccactagaagttccaggatcaagcaaagaatcaaacctctgtacctcaacat |
200 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
7172101 |
taaaactcctaaggaaccggaatcttcaccctccctaccacaactttaccactagaagtaccaggatcaagcaaagaattaaacctctgtacctcaacat |
7172002 |
T |
|
| Q |
201 |
tcagaaaaacttcatcatcaagattctctaacacgaccatatcatcttgattccattcagggttaacacctacagcaatcttggtggaagcttcttcatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
7172001 |
tcagaaaaacttcatcatcaagattctctaacacgatcatatcatcttgattcctttcagggttaacacctaccgcaatcttggtggaagcttcttcatc |
7171902 |
T |
|
| Q |
301 |
aggctttaaccaatacaccacattgtaagctctgttgttaacacttgggtaatttgcggggttgtcgattccttcagccttgtaaatcatcacatgcaaa |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7171901 |
aggctttaaccagtacaccacattgtaagctctgttgttaacacttggataatttgtggggttgtcgattccttcagccttgaaaatcatcacatgcaaa |
7171802 |
T |
|
| Q |
401 |
gcaactttgaattcttctgtg |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7171801 |
gcaactttgaattcttctgtg |
7171781 |
T |
|
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