View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19116_low_9 (Length: 296)
Name: NF19116_low_9
Description: NF19116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19116_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 36525932 - 36525652
Alignment:
| Q |
1 |
atgtcaatttagtctctgctattaagatattaaagactataagggacgaagttaggcactgattattatatttatagagttaagagactgaataggagaa |
100 |
Q |
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| T |
36525932 |
atgtcaatttagtctttgctattaagatattaaagactataagggacgaagttaggcactgattattatatttatagagtttagagattgaataggagaa |
36525833 |
T |
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| Q |
101 |
atggtaatagtttagggactaaattgataatttatttgaaaaatgaacttgggaaaggtacgaaggcaatccaccacactactgcaaatcgacaaattat |
200 |
Q |
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| T |
36525832 |
atggtaatagtttagggactaaattgataatttatttgaaaaatgaacttgggaaaggtacgaaggcaatccaccacactactgcaaatcgacaaattat |
36525733 |
T |
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| Q |
201 |
agtacttaaaaacaattaaggaacgtcaagccacagtacaggattaaaagttagtnnnnnnnncacgagactaggatatgt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
36525732 |
agtacttaaaaacaattaaggaacgtcaagccacagtacaggattaaaagttggtaaaaaaaacacgagactaggatatgt |
36525652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 22559574 - 22559536
Alignment:
| Q |
3 |
gtcaatttagtctctgctattaagatattaaagactata |
41 |
Q |
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| T |
22559574 |
gtcaatttagtctctgctattaagatgttagagactata |
22559536 |
T |
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