View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19117_high_10 (Length: 347)
Name: NF19117_high_10
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_high_10 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 32604636 - 32604290
Alignment:
| Q |
1 |
attatacttactcctttcgctcttgtgctcgaaaggtaccttcctcgatcattttcttcctctttttgtgtctctttcaatgatgttgaattattgatag |
100 |
Q |
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| T |
32604636 |
attataattactcctttcgctcttgtgctcgaaaggtaccttcctcgatcattttcttcctctttttgtgtctctttcaatgatgttgaattattgatag |
32604537 |
T |
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| Q |
101 |
agattagaatcagacaaaatgaaattagtctttaatatttaattttaatgtacggannnnnnnncatatacaaattttttctagagttcaacnnnnnnna |
200 |
Q |
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| T |
32604536 |
agattagaatcggacaaaatgaaattagtctttaatatttaattttaatataccgattttttttcatatacaatttttttctagagttcaacttttttta |
32604437 |
T |
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| Q |
201 |
gtatttgtgtagctactatatactttgtcttcataagcttaacaagattttgttttaattatttatctttacagaaaaacaaggccaaagatgactctcc |
300 |
Q |
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| T |
32604436 |
gtatttgtgtagctactatatactttgtcttcataagcttaacaagattttgttttaattatttatctttacagaaaaacaaggccaaagatgactctcc |
32604337 |
T |
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| Q |
301 |
ccatcttcctgaggatagtggcacttggtttccttgagtaaggctct |
347 |
Q |
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| T |
32604336 |
ccatcttcctgaggatagtggcacttggtttccttgagtaaggctct |
32604290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 10604736 - 10604657
Alignment:
| Q |
268 |
tttacagaaaaacaaggccaaagatgactctccccatcttcctgaggatagtggcacttggtttccttgagtaaggctct |
347 |
Q |
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|||||||||||| |||||||||||||| ||||| ||||| ||||| ||| || |||||||||||||||||||||||| |
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| T |
10604736 |
tttacagaaaaattaggccaaagatgacactccctatctttttgaggctagcggttcttggtttccttgagtaaggctct |
10604657 |
T |
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