View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19117_high_12 (Length: 300)
Name: NF19117_high_12
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 40593456 - 40593165
Alignment:
| Q |
1 |
gaagtctggctccttccgttagattcaaactcctttgataaattagtaacgctttatttatttactaatacaattattacacgtttagttaattattaca |
100 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40593456 |
gaagtctggctccttccggtagatccaaactcctttgataaattagtaacgctttatttatttactaatacaattattacacgtttagttaattattaca |
40593357 |
T |
|
| Q |
101 |
cattgtttaggttaagtctattgtggataaataagatagtgcttattttctatcattatatcttccttgatccaaccctggaacttattgatttaatagt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40593356 |
cattgtttaggttaagtctactgtggataaataagatagtgcttattttctatcattatatcttccttgatccaaccctggaacttattgatttaatagt |
40593257 |
T |
|
| Q |
201 |
gaaaatatacatgttcatggtactacaccgacctcattagcttgtgcagaacaaaagtaacttacaacttattgcatatatatcttcatctc |
292 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40593256 |
gaaaatatacatgttcgtggtactacaccgacctcattagcttgtgcagaacaaaagtaacttacaacttattgcatatatatcttcttctc |
40593165 |
T |
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