View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19117_high_14 (Length: 282)
Name: NF19117_high_14
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 29719667 - 29719415
Alignment:
| Q |
17 |
tccagtaaaagtcggtcaaatattcaaacatagaaacatctttcttttgaattttcaaggcaaatatttcaacctaagcaaaatataatattttttgtta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29719667 |
tccagtaaaagtcggtcaaatattcaaacatagaaacatctttcttttgaattttcaaggcaaatatttcaacctaagcaaaatataatattttttgtta |
29719568 |
T |
|
| Q |
117 |
tatacacttagtaatttctacaatttaattgcagcacaaaagagtgttacaggccgaaactaaagagtctagaattttgttttaagtatcagttcaagga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29719567 |
tatacacttagtaatttctacaatttaattgcagcacaaaagagtgttacaggccgaaactaaagagtctagaattttgttttaagtatcagttcaagga |
29719468 |
T |
|
| Q |
217 |
ggacaacaaccaattcagggaaatattttaagctaagctggcacacacaaact |
269 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29719467 |
ggacaacaatcaattcagggaaatattttaagctaagctggcacacacaaact |
29719415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 29659678 - 29659551
Alignment:
| Q |
43 |
aacatagaaacatctttcttttgaattttcaaggcaaatatttcaacctaagcaaaatataatattttttgttatatacacttagtaatttctacaattt |
142 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || |||| |
|
|
| T |
29659678 |
aacatggaaacatctttgtcttgaattttcaagtcaaatatttcaacctaagcaaaatataatattttttattatatttacttagtaatttatatgattt |
29659579 |
T |
|
| Q |
143 |
aattgcagcacaaaagagtgttacaggc |
170 |
Q |
| |
|
|||||| |||||||||||||||| |||| |
|
|
| T |
29659578 |
aattgctgcacaaaagagtgttataggc |
29659551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 33160234 - 33160344
Alignment:
| Q |
61 |
ttttgaattttcaaggcaaatat-ttcaacctaagcaaaatataatattttttgttatatacacttagtaatttcta-caatttaattgcagcacaaaag |
158 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||||| ||||| |||| ||||| ||||| ||| | ||||||||| |
|
|
| T |
33160234 |
ttttgaattctcaaggcaaatatgttcaacctaagcaaaatatatta-tttttgttatattcacttggtaacttctataaatttcatttctgcacaaaag |
33160332 |
T |
|
| Q |
159 |
agtgttacaggc |
170 |
Q |
| |
|
||||||| |||| |
|
|
| T |
33160333 |
agtgttaaaggc |
33160344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University