View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19117_high_7 (Length: 452)
Name: NF19117_high_7
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 2914403 - 2914133
Alignment:
| Q |
7 |
aagttgagatcgaagctttaacctccttatcattccttttgttaacccttacagcgatgaaactatatannnnnnnngttataacaagaagggccaaagc |
106 |
Q |
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| T |
2914403 |
aagttgagatccaagctttaacctccttatcattccttttgttaacccttacagtgatgaaactatat-ttttttttgttataacaaggagggccaaagc |
2914305 |
T |
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| Q |
107 |
ttggaaaaagagaacgaaaccgaaattaacgagggatagaaatctccattacattagcaatcaacaaatgactaaattgagacggacaatacataaagga |
206 |
Q |
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| T |
2914304 |
ttggaaaatgagaacgaaaccgaaattaacgagggatagaaatctccattacattagcaatcaacaaatgactaaattgagacggacaatacagaaagga |
2914205 |
T |
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| Q |
207 |
aacagtttcagaacccatggagcaaccataattagataactcatttgcctattgatttgcttcaccgtaaga |
278 |
Q |
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| T |
2914204 |
aacagtttcagaacccatggagcaaccataattagataactcatttgcctattgatttgcttcaccgtaaga |
2914133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 276 - 405
Target Start/End: Complemental strand, 2914094 - 2913965
Alignment:
| Q |
276 |
agagaatcttgtggactatagacctagcacaaggacttcaacgctcatttgagttaagaccttctagcacaccccaaagctccaccaaataagcacgggt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
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| T |
2914094 |
agagaatcttgtggactatagacctagcacaaggacttcaacgctcatttgagttaaggccttctaccacaccccaaagctccgccaaataagcacgggt |
2913995 |
T |
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| Q |
376 |
agcacttaggtgacacattgtagttggtga |
405 |
Q |
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| T |
2913994 |
agcacttgggtgacacattgtggttggtga |
2913965 |
T |
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