View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19117_low_11 (Length: 341)
Name: NF19117_low_11
Description: NF19117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19117_low_11 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 35927372 - 35927700
Alignment:
| Q |
13 |
gaacctgtggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtc |
112 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35927372 |
gaacctctggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtc |
35927471 |
T |
|
| Q |
113 |
gtgacacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccacta |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35927472 |
gtgacacaatggagcgtagatgttatagaaatctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccacta |
35927571 |
T |
|
| Q |
213 |
gtgaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataaccccttcaaac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35927572 |
gtgaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgaattcaaagcatgagtccaaaagtaatcaaataaccccttcaaac |
35927671 |
T |
|
| Q |
313 |
ttgtggcatcatcaatccaagcattccct |
341 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
35927672 |
ttgtggcatcatcaatccaagcattccct |
35927700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 35934198 - 35934514
Alignment:
| Q |
13 |
gaacctgtggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtc |
112 |
Q |
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|||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
35934198 |
gaacctctggtctatttagataggcaataccatagttatcagaacaagggtcaaaatcattagttacataaccagttgaaccatttttcagagaagagtc |
35934297 |
T |
|
| Q |
113 |
gtgacacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccacta |
212 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||||||||||| || | |||| ||||||||||||| | || |||| |||| |||| |
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| T |
35934298 |
atgacacaatggcgcatagatgttatagaagtctatctttcctttctcaatgaaggcccaatctgttacattgatacaaattgttgaataattt------ |
35934391 |
T |
|
| Q |
213 |
gtgaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataaccccttcaaac |
312 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
35934392 |
------tgtttagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccagaagtaatcaaataaccccttgtcac |
35934485 |
T |
|
| Q |
313 |
ttgtggcatcatcaatccaagcattccct |
341 |
Q |
| |
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||| |||||||||||||||||||||||| |
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|
| T |
35934486 |
ctgtagcatcatcaatccaagcattccct |
35934514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 35909981 - 35910300
Alignment:
| Q |
13 |
gaacctgtggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtc |
112 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
35909981 |
gaacctctggtctatttagataggcagaaccataataatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcagagaggagtc |
35910080 |
T |
|
| Q |
113 |
gtgacacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttg---catattgctgaagtatttcca |
209 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| | ||| | | ||| | ||||||||| ||| || ||||||||| |||| || |
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| T |
35910081 |
atgacacaatggagcatagatgttatataagtctatctttccatgttcaaagaaggcctttagtgttacattattgatacaaattgctgaaacattttca |
35910180 |
T |
|
| Q |
210 |
ctagtgaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataaccccttca |
309 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |
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| T |
35910181 |
gta------------gtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaggtaatcaaaaaaccccttta |
35910268 |
T |
|
| Q |
310 |
aacttgtggcatcatcaatccaagcattccct |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
35910269 |
aacttgtggcatcatcaatccaagcattccct |
35910300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 35939766 - 35940080
Alignment:
| Q |
15 |
acctgtggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtcgt |
114 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
35939766 |
acctctggtctatttagataggcagtgccatagtaatcagaacaagggtcaagatcattacttacataaccagttgaaccatttttcagagtagagtcgt |
35939865 |
T |
|
| Q |
115 |
gacacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccactagt |
214 |
Q |
| |
|
|||| |||||||| ||||||||| || |||||||||||||||||||| | | | ||| || ||||| | || ||||||||| |||| |||| |
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|
| T |
35939866 |
gacataatggagcatagatgttaaaggagtctatctttcctttctcaatcatggacatattcattgcattggtacaaattgctgaataattttgtttagt |
35939965 |
T |
|
| Q |
215 |
gaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataaccccttcaaactt |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |||||||||| |||||| |
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| T |
35939966 |
gaagtc------------acagtacttctcaatcaactcatgagtttgatccgagttcaaagcatgagtccacaagttatcatataacccctttaaactt |
35940053 |
T |
|
| Q |
315 |
gtggcatcatcaatccaagcattccct |
341 |
Q |
| |
|
|| |||||||||||||||||||||||| |
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|
| T |
35940054 |
gtagcatcatcaatccaagcattccct |
35940080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 35914419 - 35914735
Alignment:
| Q |
13 |
gaacctgtggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagttgaaccatttttcaaagaagagtc |
112 |
Q |
| |
|
|||||| |||| |||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
35914419 |
gaacctctggtgtatttagataggcagcaccatagtaatcagaacaagggtcaaagtcattagttacataaccagttgagccatttttgagagaagagtc |
35914518 |
T |
|
| Q |
113 |
gtgacacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccacta |
212 |
Q |
| |
|
||||| | |||||| |||||||||||| ||||||||||||||| |||| | | ||| ||| |||| ||||| | || |||| |||| ||| |
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|
| T |
35914519 |
atgacatagtggagcatagatgttataggagtctatctttccttgctcaaggaaggccttatgtgttgcattgatacaaattgatgaaacgttt------ |
35914612 |
T |
|
| Q |
213 |
gtgaagtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataaccccttcaaac |
312 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| | |||| |
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|
| T |
35914613 |
------tcagaagtgaagtcacaatacttctcaatcaactcatgagtttgatccgagttcaacgcatgagtccaaaggtaatcaaataacccccttaaac |
35914706 |
T |
|
| Q |
313 |
ttgtggcatcatcaatccaagcattccct |
341 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
35914707 |
ctgtggcatcatcaatccaagcattccct |
35914735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 35920795 - 35921107
Alignment:
| Q |
20 |
tggtctatttaaataggcaatgccatagtaatcagaacaagggtcaaaatcattacttacataaccagtt---gaaccatttttcaaagaagagtcgtga |
116 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| ||| |
|
|
| T |
35920795 |
tggtctatttagataggcagtaacatagtaatcagaacaagggtcaaaatcattgcttacgtaaccagtactagaaccatttttcagagaagagtcatga |
35920894 |
T |
|
| Q |
117 |
cacaatggagcgtagatgttatagaagtctatctttcctttctcagtgtaagccctatctgttacattgttgcatattgctgaagtatttccactagtga |
216 |
Q |
| |
|
|||||||| || | ||||||||||| ||||||||||||| ||||| | | ||| |||| ||| ||||||| || ||||||||| |||| | ||||| |
|
|
| T |
35920895 |
cacaatggcgcatggatgttatagatgtctatctttcctgtctcaacgaaggccttatcagttgcattgttacaaattgctgaaacattttctttagtg- |
35920993 |
T |
|
| Q |
217 |
agtcaacagtgaagtcacagtacttctcaatcaactcatgagtttgatctgagttcaaagcatgagtccaaaagtaatcaaataaccccttcaaacttgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||| |||||| ||| | || |
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|
| T |
35920994 |
-----------aagtcacagtacttctcaatcaactcatgagtttgatctgagtttaaagcatgagtccacaagttatcatatatcccctttaaattcgt |
35921082 |
T |
|
| Q |
317 |
ggcatcatcaatccaagcattccct |
341 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35921083 |
cgcatcatcaatccaagcattccct |
35921107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 21285260 - 21285187
Alignment:
| Q |
81 |
taaccagttgaaccatttttcaaagaagagtcgtgacacaatggagcgtagatgttatagaagtctatctttcc |
154 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
21285260 |
taaccagttgaaccatttttcagagaggagtcatgacacaatggagcatagatgttatataagtctatctttcc |
21285187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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